sanket-desai
At core a zoologist, turned hobbyist programmer, love object oriented design.
Barcelona, Spain
Pinned Repositories
AGFusion
Python package to annotate and visualize gene fusions.
depranker-git
DepRanker: A gene impact score calculator (prioritization method) for RNAi / CRISPR screen results
DOME
An algorithm to prioritize low-frequency somatic mutations integrating somatic mutation propensity, mutation distribution across domain and functional and biochemical residue context within protein structures.
exogenousanalysis
Scripts related to exogenous element analysis
InfectiousPathogenDetector
Infectious Pathogen Detector
InfectiousPathogenDetector2
Updated version of the repository Infectious Pathogen Detector
jabix
API to handle SAM/BAM, GTF, BED and VCF files and information parsing from Tabix indexed files
networkxxgmml
XGMML parser for networks
pcmgen
Protein Contact Matrix Generator (PCMGen) - An interactive command line application to generate 2D contact matrices from 3D protein structures
sanket-desai's Repositories
sanket-desai/AGFusion
Python package to annotate and visualize gene fusions.
sanket-desai/depranker-git
DepRanker: A gene impact score calculator (prioritization method) for RNAi / CRISPR screen results
sanket-desai/DOME
An algorithm to prioritize low-frequency somatic mutations integrating somatic mutation propensity, mutation distribution across domain and functional and biochemical residue context within protein structures.
sanket-desai/exogenousanalysis
Scripts related to exogenous element analysis
sanket-desai/InfectiousPathogenDetector
Infectious Pathogen Detector
sanket-desai/InfectiousPathogenDetector2
Updated version of the repository Infectious Pathogen Detector
sanket-desai/jabix
API to handle SAM/BAM, GTF, BED and VCF files and information parsing from Tabix indexed files
sanket-desai/networkxxgmml
XGMML parser for networks
sanket-desai/pcmgen
Protein Contact Matrix Generator (PCMGen) - An interactive command line application to generate 2D contact matrices from 3D protein structures
sanket-desai/pyblastn
Local blastn wrapper and output parser
sanket-desai/rvd-git
Raman spectra based RNA Virus Detection tool
sanket-desai/sanket-desai-cv
Resume
sanket-desai/sars-cov-2-workflow-comparison
A collection of workflows for analyzing the SARS-CoV-2 genome.