IPD2 is an updated version of InfectiousPathogenDetector, in-silico GUI-based automated pathogen analysis pipeline for seamless analysis of data from heterogenous NGS platforms. IPD performs integrated variants analysis, along with systematic quantification of pathogen genomes. IPD additionally has an in-built SARS-CoV-2 analysis module, for assignment of viral clades of the samples analyzed and an automated report generation.
Refer to README from the "doc" directory for detailed documentation on installation and usage of IPD2. For any issues related to IPD2 usage, you may contact desai[dot]sanket12[at]gmail[dot]com.