santjg

santjg's Stars

• KordingLab/spykesML

  A class for using ML algorithms for spike prediction

  Language:Jupyter Notebook5922

• cdgreenidge/gdec

  Grating decoders

  Language:Python12

• mathiyarasuc/Fetal-state-classification-using-cardiotocography

  Fetal Heart Rate (FHR) and Uterine Contractions (UC) and it is one of the most common diagnostic techniques to evaluate maternal and fetal well-being during pregnancy and before delivery. By observing the Cardiotocography trace patterns doctors can understand the state of the fetus. Also, Fetal Heart Rate (FHR) monitoring remains a widely used method for detecting changes in fetal oxygenation that can occur during labor. By observing the Cardiotocography trace patterns doctors can understand the state of the fetus. Therefore we will use CTG data and Support Vector Machine to predict the state of the fetus.

  Language:Jupyter Notebook1

• atleer/Laminar-Population-Analysis

  Repository containing code for Laminar Population Analysis as presented in Rimehaug et al. (2024).

  Language:Jupyter Notebook1

• 3b1b/manim

  Animation engine for explanatory math videos

  Language:Python68.4k6.1k

• alonbar110/Systems-medicine-WIS-2022-

  A repository with tutorials and solutions for the course Systems medicine (WIS 2022)

  Language:Jupyter Notebook74

• oanegros/MicroscopyNodes

  Loading and handling microscopy data in blender

  Language:Python867

• EnnyvanBeest/UnitMatch

  Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days

  Language:MATLAB398

• profConradi/eigenfish

  # Eigenfish Ideas by the wonderful ["Computational Discovery on Jupyter"](https://computational-discovery-on-jupyter.github.io/Computational-Discovery-on-Jupyter/index.html) by Neil J. Calkin, Eunice Y.S. Chan, and Robert M. Corless, and the gallery of the [Bohemian Matrices site](http://bohemianmatrices.com).

  Language:Jupyter Notebook1609

• AllenInstitute/ecephys_spike_sorting

  Modules for processing extracellular electrophysiology data from Neuropixels probes

  Language:Python10787

• SpikeInterface/spikemetrics

  Metrics for spike sorting validation/quality control

  Language:Python1213

• SpikeInterface/spiketoolkit

  Python-based tools for pre-, post-processing, validating, and curating spike sorting datasets.

  Language:Python4930

• tritemio/pycorrelate

  Fast and accurate cross-correlation over arbitrary time lags. Moved to:

  Language:Python2111

• michi-d/receptive_field_reverse_correlation

  Code for receptive field reconstruction from visual neurons using white-noise analysis

  Language:Jupyter Notebook2

• JorritMontijn/zetapy

  Python code implementing the ZETA-test

  Language:Python239

• Akramz/Hands-on-Machine-Learning-with-Scikit-Learn-Keras-and-TensorFlow

  Notes & exercise solutions of Part I from the book: "Hands-On ML with Scikit-Learn, Keras & TensorFlow: Concepts, Tools, and Techniques to Build Intelligent Systems" by Aurelien Geron

  Language:Jupyter Notebook805375

• elibroftw/music-caster

  Music Caster is a modern music player with the ability to cast audio files, system audio, and URLs to Google Chromecasts, Google Home/Nest Minis, etc.

  Language:Python15017

• Textualize/rich

  Rich is a Python library for rich text and beautiful formatting in the terminal.

  Language:Python49.2k1.7k

• AllenInstitute/neuropixels_platform_paper

  Code used to generate figures for Siegle, Jia et al. (2019)

  Language:Jupyter Notebook64

• cortex-lab/phy

  phy: interactive visualization and manual spike sorting of large-scale ephys data

  Language:Python317156

• m-beau/NeuroPyxels

  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a pythonist who really did not want to transition to MATLAB to work with Neuropixels: it features a suite of core utility functions for loading, processing and plotting Neuropixels data.

  Language:Jupyter Notebook11127

• denmanlab/dlab

  denman lab shared functions and repositories

  Language:Python3

• brainglobe/brainrender

  a python based software for visualization of neuroanatomical and morphological data.

  Language:Python54477

• NeurodataWithoutBorders/pynwb

  A Python API for working with Neurodata stored in the NWB Format

  Language:Python17684

• MouseLand/Kilosort

  Fast spike sorting with drift correction for up to a thousand channels

  Language:Python466241

• AllenInstitute/AllenSDK

  code for reading and processing Allen Institute for Brain Science data

  Language:Jupyter Notebook343149

• cortex-lab/allenCCF

  Tools to work with Allen Inst CCF data in matlab

  Language:MATLAB12379

• petersaj/neuropixels_trajectory_explorer

  Neuropixels trajectory explorer with the Allen CCF mouse atlas

  Language:MATLAB6624

• datajoint/datajoint-python

  Relational data pipelines for the science lab

  Language:Python16884

• joao-semedo/communication-subspace

  Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)

  Language:MATLAB4215