satriaphd

axolotl

Axolotl is a Python library for scalable genome analysis, addressing the gap in tools for handling the rapid growth of genomic data with easy parallel processing.

bigslice

A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data

mibig-json

Repository to track changes in MIBiG curation data stored in JSON format

plantismash

Explore potential Biosynthetic Gene Clusters in plant genomes. This tool is originally sourced from antiSMASH 4.0.

3dplot_js_bigslice

example demo of using tSNE + plotlyjs to create a 3d plot visualization of BiG-SLiCE GCFs

antismash

antiSMASH

arrower-js

small script to draw multi genes locus (e.g. Biosynthetic Gene Clusters) as a dynamic SVG object

build_subpfam

Build per-clade pHMM models from a collection of aligned protein sequences (in a multifasta format).

mol-from-smiles

simple python function to calculate molecular formula and atomic mass from SMILES string

npdc_portal

Web-based internal database for managing and serving NPDC genome sequencing data

satriaphd/build_subpfam

Build per-clade pHMM models from a collection of aligned protein sequences (in a multifasta format).

satriaphd/mol-from-smiles

simple python function to calculate molecular formula and atomic mass from SMILES string

satriaphd/arrower-js

small script to draw multi genes locus (e.g. Biosynthetic Gene Clusters) as a dynamic SVG object

satriaphd/3dplot_js_bigslice

example demo of using tSNE + plotlyjs to create a 3d plot visualization of BiG-SLiCE GCFs

satriaphd/antismash

antiSMASH

satriaphd/bigscape-htmlvis

HTML visualisation for BiG-SCAPE data

satriaphd/bigscape_aligner_analysis

collection of scripts to perform analyses over different alignment methods used by BiG-SCAPE

satriaphd/bigslice_on_spark

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satriaphd/clustering-bigsscuit

a version control for the development of bigsscuit's clustering algorithm

satriaphd/mibig-scripts

collection of scripts to work on MIBiG 2.0 data

satriaphd/mibig-ui

Web UI for the MIBiG database

satriaphd/mibig-ui-learning

An attempt to learn and develop UI for mibig

satriaphd/satriaphd.github.io

satriaphd/simb_workshop_genome_mining