medema-group/bigslice

Issues

• Issue Querying antiSMASH BGCs

  #61 opened 2 years ago by planctoqueen
  4

• ValueError: Could not determine alphabet of file

  #82 opened 4 months ago by yuezhiTang
  2

• Are antismash versions important?

  #83 opened 4 months ago by ayaloglu
  0

• How do I extract similar BGC distance values from the interactive output

  #72 opened a year ago by boykawang
  15

• "Can't find a matching hmm library in the database!" when running --query mode from antiSMASH v6 results

  #67 opened a year ago by jolespin
  7

• “sqlite3.OperationalError: unable to open database file” error when using "--export-tsv"

  #81 opened 5 months ago by BioGavin
  1

• Problems encountered while running bigslice

  #80 opened 5 months ago by yuezhiTang
  0

• Installation check

  #65 opened 2 years ago by yschencau
  6

• antiSMASH output .gbk files not recognized by BigSlice

  #75 opened 6 months ago by ERBringHorvath
  1

• - __main__ - ERROR - An error occurred while downloading bigslice_models.tar.gz

  #78 opened 6 months ago by liuliuliu0304
  4

• antismash version7 output not recognized by bigslice

  #77 opened 6 months ago by HongjaePark86
  2

• Parsing and Inserting gbks from MIBiG

  #59 opened 2 years ago by nicholascdove
  5

• BGCs are being clustered into one GCF, and the distance values appear identical.

  #76 opened 10 months ago by ChrisC610
  0

• "is not a recognized antiSMASH clustergbk"

  #74 opened a year ago by MingyueCheng
  0

• KeyError while running bigslice

  #68 opened a year ago by AmayAgrawal
  4

• BiG-SLiCE output visualization issues: jsonify'd DataTables & antiSMASH6

  #48 opened 2 years ago by ialas
  2

• Fetching the download_bigslice_hmmdb

  #71 opened a year ago by MenusGarg
  0

• extract_bgcs_metadata.py AttributeError

  #57 opened 2 years ago by neptuneyt
  10

• datasets.tsv

  #70 opened a year ago by wang123yue
  0

• bigslice output

  #50 opened 2 years ago by INFINITY1993
  2

• [Feature Request] Remove the requirement for the output directory to have a subdirectory called `result` (even in a new run)

  #66 opened a year ago by jolespin
  1

• can't use pip install ./bigslice/ commend

  #42 opened 3 years ago by byeollee
  2

• Running on a job queue / non-interactive environment

  #63 opened 2 years ago by cmfield
  2

• Trouble querying antiSMASH BGCs

  #47 opened 2 years ago by pjtorres
  3

• where the Can't find HMM model libraries can be put ?

  #54 opened 2 years ago by Caiyulu-818
  1

• Incorrect version

  #58 opened 2 years ago by dalwindercheema
  0

• Cosine distance among BGCs

  #56 opened 2 years ago by neptuneyt
  0

• Changing the default temporary directory location

  #55 opened 2 years ago by matinnuhamunada
  0

• antiSMASH 6

  #35 opened 4 years ago by satriaphd
  1

• must using antismash parameter --pfam2go?

  #53 opened 2 years ago by Caiyulu-818
  0

• Suggestion: remove interactive prompts

  #52 opened 2 years ago by danudwary
  0

• os.sched_getaffinity not available on MacOS

  #51 opened 2 years ago by danudwary
  0

• Error in generation of antismash regions using "generate_antismash_gbk.py"

  #49 opened 2 years ago by mfrand-7
  0

• Broken link for jupyter notebook scripts?

  #46 opened 3 years ago by matinnuhamunada
  1

• raise FileNotFoundError() while pharsing hmmtext

  #37 opened 3 years ago by ZehanDai
  2

• [Question]: isolate_fungal dataset in pre-processed dataset

  #40 opened 3 years ago by tamuanand
  1

• [Question] Pre-processed antiSMASH results from BiG-SLiCE paper

  #41 opened 3 years ago by tamuanand
  1

• question about input folder (clustering mode)

  #43 opened 3 years ago by Valentin-Bio-zz
  1

• Unpack error

  #45 opened 3 years ago by kpenn88
  5

• Cases when the taxonomy information of the interested species is only partially available

  #39 opened 3 years ago by jinnjy
  1

• Possible to generate a data frame output from Interactive output

  #44 opened 3 years ago by ashwinssudarshan
  1

• using with gecco

  #38 opened 3 years ago by smb20200615
  0

• Missing script for taxonomy assignment

  #33 opened 4 years ago by artur-matysik
  3

• Error when generating antismash-like reions

  #34 opened 4 years ago by artur-matysik
  2

• bug: parsed folder paths lose its first letter

  #36 opened 4 years ago by satriaphd
  0

• Error: download_bigslice_hmmdb

  #27 opened 4 years ago by barakdror
  2

• start_server.sh fails on macOS

  #32 opened 4 years ago by chanana
  1

• Failure to run example input folder

  #31 opened 4 years ago by chanana
  4

• Add BiG-SLiCE to Bioconda

  #29 opened 4 years ago by mdehollander
  0

• Can't find preprocessed data from NCBI BGCs

  #25 opened 4 years ago by valntn
  1