sblab-bioinformatics

5hmUseq

Data analysis for sequencing 5-hydroxymethyluracil at single-base resolution (via chemical modification and mismatch formation)

Chem-map

dna-g4-methylation-dnmt1

Data access and computational analyses for DNA G-quadruplex structures mold the DNA methylome

dna-secondary-struct-chrom-lands

Published methods

dnmt3a-dnmt3b

Sequence preference of DNMT3A/B dictates genome-wide DNA methylation signature

epigenetics-of-glioblastoma

Computational methods for Base resolution maps reveal the importance of 5-hydroxymethylcytosine in a human glioblastoma

G4-vs-TFs

mapping-5hmU-in-Leishmania

qG4-ChIP-seq-of-breast-cancer-PDTX

snAP-seq

Computer code for the snAP-seq manuscript

sblab-bioinformatics/dna-secondary-struct-chrom-lands

Published methods

sblab-bioinformatics/G4-vs-TFs

sblab-bioinformatics/qG4-ChIP-seq-of-breast-cancer-PDTX

sblab-bioinformatics/5hmUseq

Data analysis for sequencing 5-hydroxymethyluracil at single-base resolution (via chemical modification and mismatch formation)

sblab-bioinformatics/Chem-map

sblab-bioinformatics/dnmt3a-dnmt3b

Sequence preference of DNMT3A/B dictates genome-wide DNA methylation signature

sblab-bioinformatics/epigenetics-of-glioblastoma

Computational methods for Base resolution maps reveal the importance of 5-hydroxymethylcytosine in a human glioblastoma

sblab-bioinformatics/G4_and_trancription

sblab-bioinformatics/snAP-seq

Computer code for the snAP-seq manuscript

sblab-bioinformatics/dna-g4-methylation-dnmt1

Data access and computational analyses for DNA G-quadruplex structures mold the DNA methylome

sblab-bioinformatics/faq

Answers to frequently asked questions about datasets generated in the Balasubramanian group

sblab-bioinformatics/Illumina-450K-oxBS

Code accompanying the manuscript "Accurate measurement of 5-methylcytosine and 5-hydroxymethylcytosine in human cerebellum DNA by oxidative bisulfite on an array (OxBS-array)"

sblab-bioinformatics/mapping-5hmU-in-Leishmania

sblab-bioinformatics/rebuilt-enhanced-methyl-seq

sblab-bioinformatics/workflows

Typical workflows for common tasks

sblab-bioinformatics/5fC-nucleosome

Computational methods for our manuscript in 5fC and nucleosomal organization

sblab-bioinformatics/5fC-protocol

Computational methods for manuscript on 5fC-enrichment protocol

sblab-bioinformatics/bayesDiffMethyl

Differential methylation by Bayesian approach

sblab-bioinformatics/BG4_commentary

sblab-bioinformatics/BG4_CUT_and_Tag_sc

sblab-bioinformatics/cmpp

Computer code and data access for the CMPP manuscript

sblab-bioinformatics/dario-test

Test repository

sblab-bioinformatics/django-sblab

Code for django admin behind sblab database

sblab-bioinformatics/G4_in_stem_cells_diff

sblab-bioinformatics/GWscreen_G4sensitivity

Computational methods genome-wide shRNA screen with G-quadruplex ligands sensitisation

sblab-bioinformatics/rna-g4-proteins

Computer code and data access for the manuscript