sblab-bioinformatics/snAP-seq

Computer code for the snAP-seq manuscript

This repository contains data access and computational analyses for the methods developed in our snAP-seq manuscript

Data

All the raw sequencing data, snAP-seq sites and peaks have been deposited in the ArrayExpress database at EMBL-EBI under accession number E-MTAB-7152

Code

• Synthetic oligonucleotide experiments: exploring synthetic and 5-hmU N-oligo libraries
• snAP-seq in a parasite genome: mapping snAP sites after SMUG1 and UNG treatments in Leishmania major and downstream analyses
• snAP-seq in the human genome: mapping AP peaks in APE1 knock down and wild type HeLa cell line