sbliven
Bioinformatician & Open source developer. Interests in computational biology, machine learning, visualization, 3D printing, and mathematics.
Paul Scherrer InstituteZurich, Switzerland
Pinned Repositories
biojava
DO NOT FORK! This repository is outdated. It is only kept as a reference for old forks. Create a clean clone from https://github.com/biojava/biojava
biojava-sbliven
BioJava is an open-source project dedicated to providing a Java framework for processing biological data.
eppic
Evolutionary protein-protein interface classifier
eppic-pipeline
This repository contains python scripts to calculate EPPIC results for each new UniProt release and to perform weekly topup in EPPIC db
geometry-simple
3D geometry library for python. Forked from http://code.google.com/p/geometry-simple/
rcsbsearch
Python interface for the RCSB search API.
sketchup_svg_importer
svg.rb, the SVG importer plugin for Sketchup 6+
symmetry
Detect, analyze, and visualize protein symmetry
tral
Tandem Repeat Annotation Library
wikipedia-widget
Wikipedia Dashboard Widget for OS X
sbliven's Repositories
sbliven/symmetrycad
SymmetryCAD - The OpenSCAD crystallographic toolbox
sbliven/biopython
Official git repository for Biopython (converted from CVS)
sbliven/docker-gaviewer
Docker image for gaviewer, software to explore geometric algebra visually and companion to the book 'Geometric Algebra for Computer Science' by Leo Durst, Daniel Fontijne and Stephen Mann.
sbliven/tral
Tandem Repeat Annotation Library
sbliven/3d-beacons-client
Implementation of the 3D-Beacons client (local 3D model server)
sbliven/agnosterj-zsh-theme
AgnosterJ: apjanke's fork of the Agnoster Zsh Theme
sbliven/AlignmentScore
Alignment score for detection of ancient homologies
sbliven/allvall_bin
Code to cluster All-vs-all protein comparisons. Migrated from https://bitbucket.org/sbliven/allvall_bin/
sbliven/alphafold
Open source code for AlphaFold.
sbliven/alphafold-on-fire
sbliven/Break-Into-Us
Web-based puzzle game; solve the clues to crack the combination locks.
sbliven/citation-file-format
A machine-readable and human-readable and -writable format for CITATION files. CITATION files provide reference and citation information for (research/scientific) software.
sbliven/cookiecutter-pypackage-noir
Cookiecutter template for a Python package. Black, mypy, travis, tox, sphinx, bump2version
sbliven/diamond-art
Library for creating gem painting templates
sbliven/elkan_ml
Class projects for CSE 250B, AI:Learning. All code © Spencer Bliven, Jonas Hölzler, and Andreas Landstad. Migrated from https://bitbucket.org/sbliven/elkan_ml/
sbliven/emacs-course
An emacs course
sbliven/emacs-course-and-config
An Emacs Course and Configuration
sbliven/gdrivedl
Google Drive Download Python Script
sbliven/gpcrdb
Python wrapper for accessing GPCRdb (https://gpcrdb.org/)
sbliven/jsoneditor
A web-based tool to view, edit, format, and validate JSON
sbliven/kamaji
Tool for organizing and renaming photos
sbliven/motif-search
Search protein structural motifs in the PDB.
sbliven/mt
master thesis project
sbliven/nonpareil
Copy of nonpareil by Eric L. Smith. HP calculators microcode emulator.
sbliven/ProGraphMSA
ProGraphMSA is a state-of-the-art multiple sequence alignment tool which produces phylogenetically sensible gap patterns while maintaining robustness by allowing alternative splicings and errors in the branching pattern of the guide tree. Fork of ProGraphMSA+TR from https://sourceforge.net/projects/prographmsa
sbliven/sbliven.github.io
LilyBee.ch
sbliven/scaffold-py
Simple project scaffolding for Python
sbliven/scicat_client
Client for PSI SciCat (discovery.psi.ch)
sbliven/swisscantonsmod
Modified Shapefile for Swiss Cantons
sbliven/vacationmap
Map of our progress visiting all 26 Swiss cantons