sbliven
Bioinformatician & Open source developer. Interests in computational biology, machine learning, visualization, 3D printing, and mathematics.
Paul Scherrer InstituteZurich, Switzerland
Pinned Repositories
biojava
DO NOT FORK! This repository is outdated. It is only kept as a reference for old forks. Create a clean clone from https://github.com/biojava/biojava
biojava-sbliven
BioJava is an open-source project dedicated to providing a Java framework for processing biological data.
eppic
Evolutionary protein-protein interface classifier
eppic-pipeline
This repository contains python scripts to calculate EPPIC results for each new UniProt release and to perform weekly topup in EPPIC db
geometry-simple
3D geometry library for python. Forked from http://code.google.com/p/geometry-simple/
rcsbsearch
Python interface for the RCSB search API.
sketchup_svg_importer
svg.rb, the SVG importer plugin for Sketchup 6+
symmetry
Detect, analyze, and visualize protein symmetry
tral
Tandem Repeat Annotation Library
wikipedia-widget
Wikipedia Dashboard Widget for OS X
sbliven's Repositories
sbliven/sketchup_svg_importer
svg.rb, the SVG importer plugin for Sketchup 6+
sbliven/mekoqr
Read and write Mekorama level QR codes
sbliven/earthcraft
Earthcraft: the real-world minecraft experience
sbliven/eppic
Evolutionary protein-protein interface classifier
sbliven/eppic-pipeline
This repository contains python scripts to calculate EPPIC results for each new UniProt release and to perform weekly topup in EPPIC db
sbliven/3Dmol.js
WebGL accelerated JavaScript molecular graphics library
sbliven/certbot
Certbot, previously the Let's Encrypt Client, is EFF's tool to obtain certs from Let's Encrypt, and (optionally) auto-enable HTTPS on your server. It can also act as a client for any other CA that uses the ACME protocol.
sbliven/dalliance-notebook
A Jupyter widget for displaying genomic data using the Dalliance browser
sbliven/forester
forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research
sbliven/ipyproteinfeatureview
Jupyter widget to display sequences using a Protein Feature View widget
sbliven/jekyll-template-inheritance
Code comparing answers to https://stackoverflow.com/questions/47796889/combining-posts-with-different-layouts-on-one-page-in-jekyll-liquid/48323356
sbliven/logo
A repository to host the competition for a new BioJava log
sbliven/luigi
Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in. This fork adds python2.6 support and sge improvements.
sbliven/luigi_test
Test scripts demonstrating various luigi issues and querks
sbliven/lunar-lander
One-button lunar lander simulator game in a HTML5 canvas.
sbliven/mmtf-hadoop
Some basic examples for working with the MMTF hadoop sequence file
sbliven/NewUserNotif_PLOS
PLOS Customizations of the "New User Email Notification" mediawiki extension for topicpageswiki.plos.org
sbliven/ngl
WebGL protein viewer
sbliven/pcomb
A simple parser combinator library for Java
sbliven/postfslint
post-processing scripts for fslint
sbliven/Printrun
Pronterface, Pronsole, and Printcore - Pure Python 3d printing host software
sbliven/ProPIP
Progressive Multiple Sequence Alignment with Indel Evolution
sbliven/proteinfeatureview
:round_pushpin: The Protein Feature View - a SVG library for visualising protein annotations
sbliven/PuzzleSolver
App for solving grid-based puzzles like Sudoku and Kenken
sbliven/Pymol-script-repo
Collected scripts for Pymol
sbliven/symmetry-benchmark
Benchmarks for testing the symmetry package
sbliven/synergy
Lightweight iTunes controller for Mac OS X
sbliven/testgplv3
sbliven/vis
Dynamic, browser-based visualization library
sbliven/WOPublic
Common code used in all Wincent products