sbreiff/4dn-sample-code

4dn-sample-code

This repository contains sample code for working with 4DN data locally.

Our library dcicutils is required. This can be installed via pip with:

pip install dcicutils

Use of a virtual environment is recommended.

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Notebook Contents

Downloading 4DN Contact Matrices.ipynb

Iterates through 4DN biosources and for each biosource, looks for experiment sets from a list of assays, and downloads contact matrices from those experiment sets if found.