sbreiff

Biologist, Data wrangler, Data curator, Knowledge engineer. Making scientific metadata FAIR.

Seven BridgesBoston

Pinned Repositories

fourfront
Data portal for submitting and viewing genomic data
Language:JavaScript13 15 1582
Submit4DN
Developing tools for data submission, curation and control
Language:Python4 20 30
cgap-portal
Data portal for the DBMI-BGM CGAP initiative
Language:Python7 13 00
foursight-cgap
Providing insight into your application using AWS infrastructure.
Language:Python2 4 00
portal-pipeline-utils
pipeline utilities
Language:Python0 8 01
SubmitCGAP
Support for file submissions related to CGAP.
Language:Python0 11 01
4dn-sample-code
Language:Jupyter Notebook0 1 00
adventofcode2023
Language:Jupyter Notebook0 1 00
aoc-2022
Advent of Code 2022
Language:Python0 1 00
bio_scripts
Collection of scripts for biological sequence analysis
Language:Python0 1 00

sbreiff's Repositories

sbreiff/4dn-sample-code
Language:Jupyter Notebook0 1 00
sbreiff/adventofcode2023
Language:Jupyter Notebook0 1 00
sbreiff/aoc-2022
Advent of Code 2022
Language:Python0 1 00
sbreiff/bio_scripts
Collection of scripts for biological sequence analysis
Language:Python0 1 00
sbreiff/cooler
A cool place to store your Hi-C
Language:Python1 0
sbreiff/geo_metadata_fdn
In progress - for converting GEO metadata to Submit4DN format, and 4DN metadata to GEO submission format.
Language:Python
sbreiff/online-cv
online CV
Language:CSS1 0
sbreiff/stentor_orthology_table
For assigning Stentor gene models into ortholog groups
Language:Python1 0
sbreiff/StentorGenome
scripts and plots analyzing the Stentor genome
Language:Shell1 0
sbreiff/StentorKinome
Language:Python1 0
sbreiff/temple-attendance-tracker
Language:Python1 0