scalefreegan's Stars
twosigma/beakerx
Beaker Extensions for Jupyter Notebook
marbl/SALSA
SALSA: A tool to scaffold long read assemblies with Hi-C data
doricke/IBio
Integrated Biomedical System
pachterlab/sleuth
Differential analysis of RNA-Seq
COMBINE-lab/wasabi
Prepare Sailfish and Salmon output for downstream analysis
Martinsos/edlib
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
pimentel/deep_learning_papers
A place to collect papers that are related to deep learning and computational biology
greenelab/continuous_analysis
Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.
qtltools/qtltools
A complete tool set for molecular QTL discovery and analysis
isovic/racon
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:
sritchie73/NetRep
R package containing functions for assessing the replication/preservation of network topology for weighted gene coexpression network modules in one or more independent datasets through permutation testing.
HingeAssembler/HINGE
Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"
evolvedmicrobe/dotplot
Fast generation of dotplots comparing sequences in R
sanger-pathogens/circlator
A tool to circularize genome assemblies
magenta/magenta
Magenta: Music and Art Generation with Machine Intelligence
pachterlab/lair
home of the bear's lair
paul-shannon/igvDesktopR
a simple R interface to the igv, a java program for viewing genome tracks
alexbr/movescount-batch-exporter
A batch move exporter for the the activity site movescount.com (suunto devices).
dunn5/MetricsCSV
10REM/php-garmin-connect
A PHP adapter for interrogating the Garmin Connect "API"
btroia/basis-data-export
Utility that exports and saves your Basis B1 or Peak device's uploaded sensor data.
griffithlab/GenVisR
Genome data visualizations
stephenslab/rss
Regression with Summary Statistics.
Kingsford-Group/bloomtree
pkmital/tensorflow_tutorials
From the basics to slightly more interesting applications of Tensorflow
brentp/vcfanno
annotate a VCF with other VCFs/BEDs/tabixed files
PMBio/peer
A factor analysis package
r-lib/svglite
A lightweight svg graphics device for R
IlyaLab/CombiningDependentPvaluesUsingEBM
Python, R and Matlab implementation of Brown's Method to combine dependent P-values
OHDSI/FuzzyForest
[Under development] Random classification and regression trees