schmiedc
Research Data Scientist, Computer Vision, Bioimage Analysis, Data Analysis, Microscopy.
Fondazione Human TechnopoleMilan, Italy
Pinned Repositories
auto_qc
ImageJ 1.x plugin for automatic microscopy quality control - an ImageJ plugin prototype
ECBL_quality_control
EU-OS_bioactives
OrgaMapper
ImageJ plugin for detecting and mapping organelles within a cell
OrgaMapper_Rshiny
Rshiny workflow for processing OrgaMapper results
pHluorin-Rscripts
R scripts for processing and visualizing data generated by the pHluorin workflow
pipeline_3.0
snakemake-workflows
snakemake workflows produced, tested and used at MPI CBG
SynActJ
ImageJ plugin for analyzing synaptic vesicle dynamics using Synapto-pHluorin.
SynActJ_Shiny
schmiedc's Repositories
schmiedc/auto_qc
ImageJ 1.x plugin for automatic microscopy quality control - an ImageJ plugin prototype
schmiedc/SynActJ
ImageJ plugin for analyzing synaptic vesicle dynamics using Synapto-pHluorin.
schmiedc/OrgaMapper
ImageJ plugin for detecting and mapping organelles within a cell
schmiedc/snakemake-workflows
snakemake workflows produced, tested and used at MPI CBG
schmiedc/EU-OS_bioactives
schmiedc/ECBL_quality_control
schmiedc/pHluorin-Rscripts
R scripts for processing and visualizing data generated by the pHluorin workflow
schmiedc/pipeline_3.0
schmiedc/cellDisplacement_DZNE
scripts for assessment of neuronal and glial pathologies
schmiedc/cerebellar_organoid
Machine learning approach and analysis scripts for analyzing organoids
schmiedc/OrgaMapper_Rshiny
Rshiny workflow for processing OrgaMapper results
schmiedc/SynActJ_Shiny
schmiedc/cellpainting-gallery
Cell Painting Gallery
schmiedc/checklist_images_analysis
Test github pages site for Quarep-Limi WG12
schmiedc/clij2
GPU-accelerated image processing for everyone
schmiedc/Data_restructure_scripts
Python scripts to bring EU-OS Cell Painting data in line with Cell Painting Gallery
schmiedc/ECBL_quality_control_v2.0.0
schmiedc/first-test
napari plugin test
schmiedc/imagej.github.io
GitHub Pages for ImageJ
schmiedc/list-of-update-sites
The update sites ImageJ knows about automatically
schmiedc/MeasureInt
Measure and analyse mean intensity in nuclei and cell segmentation
schmiedc/minimal
Minimal is a Jekyll theme for GitHub Pages
schmiedc/NEUBIAS_AnalystSchool2019
NEUBIAS Bioimage Analyst School 2019
schmiedc/NEUBIAS_AnalystSchool2020
schmiedc/pipeline_2.0
schmiedc/qt-test
playground for qt
schmiedc/SPIM_Registration
Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data
schmiedc/teaching-dl-course-2020
EMBL Deep Learning course 2020-21 exercises and materials
schmiedc/WG12_checklists_for_image_publishing