snakemake -s md5sum_files.smk --profile=cubi-dev -j1
sbatch run_alignment_v2.sh
sbatch merge_bams.sh
sbatch run_dedup_bams.sh
sbatch run_bqsr_bams.sh
snakemake -s md5sum_files.smk --profile=cubi-dev -j1
sbatch run_alignment_v2.sh
sbatch merge_bams.sh
sbatch run_dedup_bams.sh
sbatch run_bqsr_bams.sh