scholl-lab/sm-alignment

Issues

• Feature request: Generate Metadata File Based on Input File Naming Schema

  #16 opened 2 days ago
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• Documentation: Add Guideline for Generating the Metadata File

  #15 opened 2 days ago
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• Feature request: Add Automated Testing for Workflow Steps with Test Input Files

  #14 opened 2 days ago
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• Documentation: Add Documentation for Reference Files

  #13 opened 2 days ago
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• Documentation: Add Documentation on Tool Installation

  #12 opened 2 days ago
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• Feature request: Remove Hardcoded Values and Move to Configs

  #11 opened 2 days ago
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• Documentation: Improve Documentation with Mermaid Diagrams for Pipeline

  #10 opened 2 days ago
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• Feature request: Make Log Folder Configurable

  #9 opened 2 days ago
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• Feature request: Make bqsr_bams.smk Output Paths Dynamic

  #8 opened 2 days ago
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• Feature request: Integrate QC Tools like FASTQC and Qualimap

  #7 opened 2 days ago
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• Feature request: Script to Summarize Logs and Quality Reports into a Report for the Run

  #6 opened 2 days ago
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• Feature request: Generalize Run Script to Take Snakemake File as Parameter

  #5 opened 2 days ago
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• Feature request: Add Run Script for merge_bams_v2.smk

  #4 opened 2 days ago
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• Feature request: Make Scripts Take Config Values and Input Parameters

  #3 opened 2 days ago
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• Feature request: Adapt merge_bams_v2.smk for Flexible Input File Location

  #2 opened 2 days ago
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• Feature request: merge individual snakemake files into one pipeline file

  #1 opened a month ago
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