Expand metadata support for enrichment
Closed this issue · 2 comments
Zethson commented
Description of feature
We added lots of support to fetch metadata and the ability to enrich for Drugs (https://pertpy.readthedocs.io/en/latest/tutorials/notebooks/enrichment.html). However, for the general enrichment (currently only implemented for drugs), the metadata need to be in a specific format and stored in a specific slot (I assume).
The goal of this issue is to
- Explore and decide which other metadata we could enrich for (already available in pertpy and potentially missing)
- Store the metadata in such a way that the single enrichment function can enrich for the metadata that we deem worthy
- If this works well, we should also decouple the metadata call and how it's used in the scoring function. Currently, it implicitly uses the chembl metadata
- Update the docstrings, tutorials etc
Zethson commented
If this works well, we should also decouple the metadata call and how it's used in the scoring function. Currently, it implicitly uses the chembl metadata