scwatts

Pinned Repositories

Bactabolize
Language:Python36 5 220
oncoanalyser
A comprehensive cancer DNA/RNA analysis and reporting pipeline
Language:Nextflow55 168 3710
awasm
Assemble microbial genomes in your browser
Language:C1 2 00
fastspar
Rapid and scalable correlation estimation for compositional data
Language:C++83 5 3726
genome_painter
Paint genomes with taxa-specific k-mer probabilities
Language:C++15 2 31
hicap
in silico typing of the H. influenzae cap locus
Language:Python11 4 64
hla_realignment
Language:Python2 1 00
integer_aligner
Global MSA of integer sequences
Language:C++1 2 00
multiqc_umccr_fork
Language:Python1 1 00
treeclust
High performance phylogeny clustering in python
Language:C2 2 00

scwatts's Repositories

scwatts/fastspar
Rapid and scalable correlation estimation for compositional data
Language:C++83 5 3726
scwatts/hicap
in silico typing of the H. influenzae cap locus
Language:Python11 4 64
scwatts/hla_realignment
Language:Python2 1 00
scwatts/multiqc_umccr
Language:HTML1 1 00
scwatts/ktyper
Web application for MALDI-TOF spectrum classification
Language:JavaScript0 3 12
scwatts/amazon-ebs-autoscale
Language:Shell0 0
scwatts/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell2 0
scwatts/bolt
Language:Python1 2
scwatts/cloudos-exploration
Language:Nextflow
scwatts/gene_panels
Language:R1 0
scwatts/golang_prog_fusionfs_debug
Language:Go1 01
scwatts/gpgr_sash
Language:R1 0
scwatts/hmftools
Various algorithms for analysing genomics data
Language:Java0 0
scwatts/hmftools_pipeline
Language:Nextflow1 0
scwatts/ichorcna-nf
Language:Nextflow1 1
scwatts/ichorcna-pipeline-example
Language:Nextflow1 0
scwatts/multi-package-containers
Testing building mulled containers for multi-requirement tools.
0 0
scwatts/MultiQC
Language:Python1 0
scwatts/nf-core-modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
Language:Nextflow
scwatts/nf-core-test-datasets
Test data to be used for automated testing with the nf-core pipelines
scwatts/nf-core-tools
Python package with helper tools for the nf-core community.
Language:Python0 0
scwatts/nf-core-website
Code and files for the main nf-core website.
Language:Astro0 0
scwatts/nf-schema
Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
scwatts/oncoanalyser-cloudos
Language:Nextflow
scwatts/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Language:Nextflow0 0
scwatts/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Language:Nextflow0 0
scwatts/sash
Language:Nextflow1 1
scwatts/star-align-nf
Language:Groovy1 0
scwatts/t1k_pipeline
Language:Nextflow1 0
scwatts/umccr_reference_data
1 0