Pinned Repositories
Bactabolize
oncoanalyser
A comprehensive cancer DNA/RNA analysis and reporting pipeline
awasm
Assemble microbial genomes in your browser
fastspar
Rapid and scalable correlation estimation for compositional data
genome_painter
Paint genomes with taxa-specific k-mer probabilities
hicap
in silico typing of the H. influenzae cap locus
hla_realignment
integer_aligner
Global MSA of integer sequences
multiqc_umccr_fork
treeclust
High performance phylogeny clustering in python
scwatts's Repositories
scwatts/fastspar
Rapid and scalable correlation estimation for compositional data
scwatts/hicap
in silico typing of the H. influenzae cap locus
scwatts/hla_realignment
scwatts/multiqc_umccr
scwatts/amazon-ebs-autoscale
scwatts/bioconda-recipes
Conda recipes for the bioconda channel.
scwatts/bolt
scwatts/cloudos-exploration
scwatts/gene_panels
scwatts/golang_prog_fusionfs_debug
scwatts/gpgr_sash
scwatts/hmftools
Various algorithms for analysing genomics data
scwatts/hmftools_pipeline
scwatts/ichorcna-nf
scwatts/ichorcna-pipeline-example
scwatts/multi-package-containers
Testing building mulled containers for multi-requirement tools.
scwatts/MultiQC
scwatts/nf-core-modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
scwatts/nf-core-test-datasets
Test data to be used for automated testing with the nf-core pipelines
scwatts/nf-core-tools
Python package with helper tools for the nf-core community.
scwatts/nf-core-website
Code and files for the main nf-core website.
scwatts/oncoanalyser-cloudos
scwatts/reference_data
scwatts/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
scwatts/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
scwatts/sash
scwatts/simple_nf_tower
scwatts/star-align-nf
scwatts/t1k_pipeline
scwatts/umccr_reference_data