Pinned Repositories
AMR_pipeline
Antibody_analysis
ASAP
Automated Sanger Analysis Pipeline (ASAP): a tool for rapidly analyzing Sanger sequencing data with minimum user interference.
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
beyond-bar-and-box-plots
Hands–on code to create and style chart alternatives with ggplot2
Bioinformatics_introduction
BioInstaller
A comprehensive R package to integrate bioinformatics resources, such as software/script and database.
Biological_databases_API
An introduction to Biological Databases and how the API can be used to access data
brewpitopes
Set of tools to manage epitope prediction results from linear and structural origin and to integrate a pipeline of prioritization filters.
btp-workshop-ngs
Bioinformatics Training Platform (BTP) Workshop: Introduction to NGS
sebymusundi's Repositories
sebymusundi/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
sebymusundi/beyond-bar-and-box-plots
Hands–on code to create and style chart alternatives with ggplot2
sebymusundi/BioInstaller
A comprehensive R package to integrate bioinformatics resources, such as software/script and database.
sebymusundi/Biological_databases_API
An introduction to Biological Databases and how the API can be used to access data
sebymusundi/bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
sebymusundi/cheatsheets
RStudio Cheat Sheets
sebymusundi/cytoscape-tutorials
Collection of modular Cytoscape tutorials for online presentation using reveal.js
sebymusundi/grabseqs
A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
sebymusundi/Hello-world
sebymusundi/intbt_2019
For sharing resource and tutorials from the int-bt H3ABioNet training
sebymusundi/Intro-to-R-with-DGE
sebymusundi/Introduction-to-Linux
This is a basic introductory course material prepared for the Open Science Workshop, Nairobi.
sebymusundi/IntroductionLinux
sebymusundi/IntroductoryMarkdown
Introduction the basic markdown syntax training materials for Open Science Workshop, Nairobi.
sebymusundi/learn-python3
Jupyter notebooks for teaching/learning Python 3
sebymusundi/MachineLearning4Malaria
Analyse trends in machine learning adoption in Malaria Research
sebymusundi/MG-RAST
The MG-RAST Backend -- the API server
sebymusundi/MyFirstFork
Fork this repository and make changes to the README
sebymusundi/oneliners
Useful bash one-liners for bioinformatics.
sebymusundi/Openaccess-Options
The aim is to create a resource where people can get information on journals where they can publish at zero or low cost
sebymusundi/OpenScienceKE
Page for Open Science in Bioinformatics Worskop on 9th and 10th August, 2018.
sebymusundi/Python4Bioinformatics
Lecture resources for Python for Bioinformatics EANBiT course.
sebymusundi/ReproducibleResearchRStudio
This is a basic introductory course material prepared for the Open Science Workshop, Nairobi.
sebymusundi/Rstudio-link
sebymusundi/sortmerna
SortMeRNA: next-generation sequence filtering and alignment tool
sebymusundi/sra-tools
SRA Tools
sebymusundi/tbrucei_gcn
Code used in the analysis pipeline of T. brucei Gene Co-expression Network study
sebymusundi/TeachingJupyterNotebooks
Training materials for the Open Science Workshop held in Nariobi
sebymusundi/Trinotate.github.io
web documentation for Trinotate
sebymusundi/Vaxign-ML-docker