Add module for network inference using SPRING

Question

Add module for network inference using SPRING

dileep-kishore opened this issue 4 years ago · 2 comments

dileep-kishore commented 4 years ago

Here is the link to the repo: https://github.com/GraceYoon/SPRING

Answer 1 · 2021-02-09T21:34:54.000Z

Also, look at this implementation in NetCoMi

https://github.com/stefpeschel/NetCoMi/blob/6eda19b449ccf02261ef24792b922f989c1467ff/R/calc_association.R#L120-L150

Answer 2 · 2021-02-16T22:13:00.000Z

SPRING is very specific to sparsity and zero values in the OTU table and needs manual processing for most use cases. We abandon this in favor of #199