segrelab/cometspy

Issues

• KeyError: 'COMETS_HOME'

  #16 opened 3 years ago by merveyrc
  14

• Print progression messages from COMETS while it is running

  #43 opened 2 years ago by hgscott
  1

• NaN returned in total biomass log due to default biomass parameters

  #53 opened 10 months ago by zoey-rw
  3

• Change optimizer from Gurobi to GLPK

  #45 opened a year ago by weeklymessage
  9

• Modifying the effect of the death rate

  #48 opened a year ago by zoey-rw
  1

• Parsing intermediate files to match final outputs

  #52 opened a year ago by zoey-rw
  1

• Changing upper bound of objective function to limit growth

  #47 opened a year ago by zoey-rw
  1

• UnicodeDecodeError: 'utf-8'

  #46 opened a year ago by complicatedZ
  4

• 'comets.py' error

  #50 opened a year ago by 2132030
  20

• error('COMETS_HOME environmental variable is not set')

  #49 opened a year ago by 2132030
  1

• `line_terminator` is deprecated

  #33 opened 2 years ago by hgscott
  1

• The function or variable 'getSecAbsExcMets' is not recognized

  #42 opened 2 years ago by yqq-79
  3

• Biomass coordinates don't match the flux coordinates

  #44 opened 2 years ago by hgscott
  3

• Models input order affect metabolites flux and biomass.

  #41 opened 2 years ago by Shlomit840
  7

• Write a landing page for the documentation

  #36 opened 2 years ago by hgscott
  4

• Add links in the Navigation Pane

  #39 opened 2 years ago by hgscott
  1

• Make an installation page

  #38 opened 2 years ago by hgscott
  0

• Update documentation

  #30 opened 2 years ago by hgscott
  10

• Make template/set of best practices for writing docstrings

  #37 opened 2 years ago by hgscott
  0

• Change the name of the default branch to main

  #34 opened 2 years ago by hgscott
  0

• Add a project description on PyPI

  #32 opened 2 years ago by hgscott
  0

• Pandas errors when checking layout

  #26 opened 2 years ago by hgscott
  15

• Automate releases

  #29 opened 2 years ago by hgscott
  0

• Warning prints “notable” instead of “not able”

  #25 opened 2 years ago by hgscott
  0

• Typo in jmatio path

  #23 opened 2 years ago by hgscott
  0

• Problem with set_specific_metabolite_at_location.

  #22 opened 2 years ago by dukovski
  0

• weird behavior with `static` compounds

  #20 opened 2 years ago by hariszaf
  3

• Setting Initial Populations in a Loop

  #18 opened 2 years ago by hgscott
  5

• error in comets.py: self.total_biomass = self.total_biomass.astype('float')

  #10 opened 4 years ago by beacamara
  8

• Growth rate after setting media concentration and parame

  #17 opened 3 years ago by behzadk
  1

• Potential bug in signalling

  #13 opened 3 years ago by behzadk
  2

• Compatibility issue with different model implementations?

  #14 opened 3 years ago by bigsuicideparty
  3

• the method of cometspy.comets() can not working properly

  #15 opened 3 years ago by wupeng1998
  1

• Using positive lower bound produces unexpected behaviour

  #12 opened 3 years ago by behzadk
  19

• error when following case study: Studying the evolution citrate utilization in the Long Term Evolution Experiment.

  #11 opened 4 years ago by beacamara
  11

• Error when reading a model.cmd

  #9 opened 4 years ago by beacamara
  4