Pinned Repositories
neonstore
:package: A local content-based storage system for NEON data
BI303
Repository for BI303 R exercises
Boston_trees
Shiny app for tree-planting in Boston
cohesion_networks
Scripts for calculating microbial sample cohesion using association networks
DietzeLab
Dietze Ecological Forecasting Lab Webpage
EE509
Applied Environmental Statistics course: Boston University, Earth & Environment 509
metabolic_model_curation
Curate genome-scale metabolic models using MEMOTE, cobrapy, and cometspy.
metagenomes_NEON
microbialForecasts
Code for creating and validating forecasts of microbial abundances at NEON sites.
sbx_metaquast
A Sunbeam extension to evaluate metagenome assembly using metaQUAST
zoey-rw's Repositories
zoey-rw/cohesion_networks
Scripts for calculating microbial sample cohesion using association networks
zoey-rw/metabolic_model_curation
Curate genome-scale metabolic models using MEMOTE, cobrapy, and cometspy.
zoey-rw/metagenomes_NEON
zoey-rw/BI303
Repository for BI303 R exercises
zoey-rw/Boston_trees
Shiny app for tree-planting in Boston
zoey-rw/DietzeLab
Dietze Ecological Forecasting Lab Webpage
zoey-rw/EE509
Applied Environmental Statistics course: Boston University, Earth & Environment 509
zoey-rw/microbialForecasts
Code for creating and validating forecasts of microbial abundances at NEON sites.
zoey-rw/sbx_metaquast
A Sunbeam extension to evaluate metagenome assembly using metaQUAST
zoey-rw/Exercise4RKQ
zoey-rw/GE585_Exercise4
zoey-rw/metaGEM
:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
zoey-rw/NEFI_microbe
zoey-rw/NEFI_Project-Drift
Data, code, and analyses for a Near-term Ecological Forecasting course project on invertebrate drift change at Lees Ferry.
zoey-rw/NEON_Explore
Our joint repository for the NEON workshop (Nov. 8-9, 2018)
zoey-rw/neonSoilMicrobes
R package for downloading and processing soil microbial data from the National Ecological Observatory Network.
zoey-rw/neonstore
A local content-based storage system for NEON data
zoey-rw/sbx_binning
sunbeam extension for metagenome-assembled genomes (MAGs)
zoey-rw/sbx_coassembly
Sunbeam extension to co-assemble metagenomic reads using Megahit
zoey-rw/sbx_template
Template for Sunbeam extensions.
zoey-rw/SOaP
GE585 Spring 2019: "Soil Organism chAnging Predictably" fungal functional group forecast
zoey-rw/SOC-DRaHR
Soil organic carbon data recovery and harmonization (SOC-DRaHR)
zoey-rw/soil_bacteria_functional_groups
zoey-rw/soil_genome_db
zoey-rw/soil_N_metabolic
Simulating N fluxes in soils using genome-scale metabolic models
zoey-rw/zoey-rw.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes