senresearch/BulkLMM.jl

Issues

• scan function "weights" data type issue

  #101 opened 5 months ago by jb621-star
  0

• TagBot trigger issue

  #47 opened 2 years ago by JuliaTagBot
  27

• Compilation error using "REML" in "bulkscan_grid()" functions.

  #81 opened a year ago by learningMalanya
  0

• Add -log10(P) output option

  #83 opened a year ago by learningMalanya
  1

• Documentation - bulkscan_null()

  #94 opened a year ago by harperkole
  1

• "prior_variances" to be made as a vector input for multiple-trait scan functions

  #93 opened a year ago by learningMalanya
  0

• Adjustment for fixed set of covariates for all traits

  #46 opened a year ago by sens
  2

• error when running the examples

  #85 opened a year ago by lzhangUT
  1

• New feature

  #61 opened a year ago by GregFa
  2

• Small issues in new functions performing multiple trait scans:

  #55 opened 2 years ago by learningMalanya
  0

• NEWS.md

  #56 opened 2 years ago by learningMalanya
  0

• scan_lite_multivariate() `nb` should have a default

  #21 opened 2 years ago by GregFa
  1

• Multithreading inefficiency in tR2LOD!() in bulkscan.jl

  #51 opened 2 years ago by learningMalanya
  0

• Performing test of more than one degree of freedom

  #50 opened 2 years ago by learningMalanya
  0

• Some useful features when calculating kinship matrices (as in R/qtl2):

  #49 opened 2 years ago by learningMalanya
  0

• wls() function in wls.jl: argument `method == cholesky` is unused

  #8 opened 2 years ago by learningMalanya
  1

• rowMultiply() function in util.jl is missing return statement

  #7 opened 2 years ago by learningMalanya
  1

• Make Wls struct immutable if re-coding the loglik for wls() separately without re-using ls()

  #5 opened 2 years ago by learningMalanya
  1

• Redundancy in RSS coding?

  #4 opened 2 years ago by learningMalanya
  1

• reml loglik formulas in ls() and wls() functions in wls.jl:

  #3 opened 2 years ago by learningMalanya
  1

• README needs

  #29 opened 2 years ago by sens
  2

• Report effect sizes with LOD scores

  #45 opened 2 years ago by sens
  0