Pinned Repositories
biosample-sql
making some sense out of biosample_set.xml.gz
darth
Archival fork
nidhoggr
Archival fork
pangenome
serratus
Archival Fork of the main Serratus repository.
serratus-summary-api
serving Serratus summary data via a public API
serratus-summary-api-athena
POC for serving Serratus summary data via AWS Athena
serratus-summary-uploader
parse and upload Serratus summary files to various AWS offerings via AWS Lambda
serratus.io
Front-end code for Serratus project website
tantalus
R Data Exploration for Serratus
Serratus's Repositories
serratus-bio/tantalus
R Data Exploration for Serratus
serratus-bio/serratus.io
Front-end code for Serratus project website
serratus-bio/biosample-sql
making some sense out of biosample_set.xml.gz
serratus-bio/nidhoggr
Archival fork
serratus-bio/pangenome
serratus-bio/serratus
Archival Fork of the main Serratus repository.
serratus-bio/serratus-summary-api-athena
POC for serving Serratus summary data via AWS Athena
serratus-bio/darth
Archival fork
serratus-bio/palmdb
Database of virus RdRP barcode sequences
serratus-bio/palmid-lambda
AWS Lambda service for `palmid` R-package/container
serratus-bio/palmscan
serratus-bio/serratus-db
code for Serratus database curation and API routes
serratus-bio/serratus-summary-api
serving Serratus summary data via a public API
serratus-bio/serratus-summary-uploader
parse and upload Serratus summary files to various AWS offerings via AWS Lambda
serratus-bio/sraruninfo-sql
making Serratus SRA run metadata query-able
serratus-bio/bs2csv
Python script to extract Biosample metadata to a csv file
serratus-bio/diamond
Accelerated BLAST compatible local sequence aligner.
serratus-bio/logan-backend
serratus-bio/open-virome
monorepo for data explorer UI and APIs
serratus-bio/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
serratus-bio/seqkit
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
serratus-bio/serratus-api
[deprecated] See serratus-summary-api repo for latest implementation.
serratus-bio/serratus-batch-assembly
Archive-Only. See: https://gitlab.pasteur.fr/rchikhi_pasteur/serratus-batch-assembly
serratus-bio/serratus-geo-utils
serratus-bio/serratus-summary-api-debug
serving Serratus summary data via a public API
serratus-bio/serratus-summary-utils
serratus-bio/serratus-utils
Small scripts that perform useful functions related to the serratus platform.