Pinned Repositories
automat_chrom3D
Preparation of gtrack diploid file to run chrom3D
automat_chrom3D_colors
Utility to color beads in chrom3D
automat_euclidean
Utility to calculate Euclidean distances in chrom3D models
CMC_hic_QCs
Quality check for hic_libraries
cross_intersection
Utilty to assess number of common and unique hits across different datasets
enhancer.annotator
Given the interactions file mapping enhancers to their respective promoters, annotate an arbitrary set of loci (enhnacers).
Enriched_intervene
HiCpro_WashU
Transform HiC-Pro results to visual pair-wise interactions in WashU epigenome browser.
risk_loci_interactome
Given any coordinates of interest the utility produces a circos interactome coming from HiC-Pro results
SATB2_3D_Genome
Code used for Wahl et al.2024
sespesogil's Repositories
sespesogil/HiCpro_WashU
Transform HiC-Pro results to visual pair-wise interactions in WashU epigenome browser.
sespesogil/automat_chrom3D
Preparation of gtrack diploid file to run chrom3D
sespesogil/automat_chrom3D_colors
Utility to color beads in chrom3D
sespesogil/automat_euclidean
Utility to calculate Euclidean distances in chrom3D models
sespesogil/risk_loci_interactome
Given any coordinates of interest the utility produces a circos interactome coming from HiC-Pro results
sespesogil/SATB2_3D_Genome
Code used for Wahl et al.2024
sespesogil/CMC_hic_QCs
Quality check for hic_libraries
sespesogil/cross_intersection
Utilty to assess number of common and unique hits across different datasets
sespesogil/enhancer.annotator
Given the interactions file mapping enhancers to their respective promoters, annotate an arbitrary set of loci (enhnacers).
sespesogil/Enriched_intervene
sespesogil/Environmental_enrichment
Scripts and forked tools used in "Enviromental enrichment induces epigenomic and genome organization changes to improve cognitive function"
sespesogil/Fastq_bootstrapper
Utility to subsample fastq files
sespesogil/GEP
Generalized Enhancer Predictor (GEP)
sespesogil/HiCUP_splitter
Automatized utility to split short cis and trans-chromosomal interactions from HICUPs
sespesogil/UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..