Utility to calculate Euclidean distances in chrom3D models
- R version > v3.3.1
- Samtools > v1.1
- pheatmap
- Bedtools > 2.24.0
automat_euclidian.sh
./automat_euclidian.sh chrom3D_model ROI
chrom3D_model = path to the chrom3D file
ROI = regions of interests bedfile (chrN Start End)
New functions to compare 3D models have been incorporated. It is also now included the possibility to run a permutation analysis based in regions of interest (ROI), to determine the likelihood (probability) of finding that particular associated-ROI euclidean conformation versus randomness (both paired and unpaired tests).