seung-lab

Pinned Repositories

chunkflow
Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation
Language:Python47 23 948
cloud-volume
Read and write Neuroglancer datasets programmatically.
Language:Python126 29 30242
connected-components-3d
Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)
Language:C++338 27 5641
dijkstra3d
Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes
Language:C++68 21 2013
DracoPy
Python wrapper for Google's Draco mesh compression library.
Language:C++70 17 3123
euclidean-distance-transform-3d
Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.
Language:C++224 25 3337
kimimaro
Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
Language:C++126 25 5321
torchfields
A PyTorch add-on for working with image mappings and displacement fields, including Spatial Transformers
Language:Python50 20 62
zmesh
Marching Cubes & Mesh Simplification on multi-label 3D images.
Language:C++55 19 198
znn-release
Multi-core CPU implementation of deep learning for 2D and 3D sliding window convolutional networks (ConvNets).
Language:C++94 32 5533

seung-lab's Repositories

seung-lab/connected-components-3d
Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)
Language:C++338 27 5641
seung-lab/euclidean-distance-transform-3d
Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.
Language:C++224 25 3337
seung-lab/cloud-volume
Read and write Neuroglancer datasets programmatically.
Language:Python126 29 30242
seung-lab/kimimaro
Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
Language:C++126 25 5321
seung-lab/DracoPy
Python wrapper for Google's Draco mesh compression library.
Language:C++70 17 3123
seung-lab/dijkstra3d
Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes
Language:C++68 21 2013
seung-lab/zmesh
Marching Cubes & Mesh Simplification on multi-label 3D images.
Language:C++55 19 198
seung-lab/chunkflow
Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation
Language:Python47 23 948
seung-lab/fastremap
Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.
Language:C++43 17 145
seung-lab/igneous
Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
Language:Python40 18 8415
seung-lab/cloud-files
Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.
Language:Python36 18 408
seung-lab/python-task-queue
Asynchronous serverless task queue with timed leasing of tasks. Threaded implementations for SQS and local filesystem.
Language:Python30 18 189
seung-lab/neuroglancer
WebGL-based viewer for volumetric data
Language:TypeScript22 22 25910
seung-lab/fastmorph
Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing.
Language:C++13 17 32
seung-lab/microviewer
Multiplatform 3D numpy image browser based viewer with voxel painting.
Language:JavaScript11 18 51
seung-lab/tinybrain
Image pyramid generation for grayscale and segmentation image resize.
Language:Python9 17 6
seung-lab/mapbuffer
Serialize dict of integers to bytes and read with near zero parsing. Specialization for int to int.
Language:Python8 3 6
seung-lab/crackle
3D dense segmentation compression codec based on crack codes.
Language:C++6 18 8
seung-lab/FlyConnectome
This repository describes how to access the fly connectome from FlyWire.
Language:Jupyter Notebook53
seung-lab/compressedseg
compressed_segmentation for Neuroglancer volumes. This is the PyPI package fork.
Language:C++4 17 21
seung-lab/compresso
Compresso: Efficient Compression of Segmentation Data For Connectomics
Language:C++4 2 81
seung-lab/seuron
SEUnglab neuRON pipeline
Language:Python4 18 02
seung-lab/cross-section
Tools for computing properties of cross sections of 3D voxelized images.
Language:C++3 17 31
seung-lab/NeuroglancerJsonServer
NeuroglancerJsonServer
Language:Python3 23 12
seung-lab/ng-extend
Language:TypeScript3 26 47
seung-lab/abiss
Affinity based image segmentation system
Language:C++2 18 01
seung-lab/CAVEpipelines
instructions for creating chunkedgraph, initial meshing, l2cache etc
Language:HCL24
seung-lab/modelzoo
Trained models for public use
Language:Python16 0
seung-lab/PyAGTUM
Language:Python18 1
seung-lab/pyfqmr-Fast-Quadric-Mesh-Reduction
Mesh triangle reduction using quadrics
Language:C++