seung-lab/connected-components-3d
Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)
C++LGPL-3.0
Issues
- 3
Support for Numpy 2.0
#125 opened by lorinczszabolcs - 3
Applying dust to labels does not do anything
#124 opened by Mohinta2892 - 5
Any way to make this GPU Compatible?
#122 opened by aymuos15 - 4
Add a better error for type support.
#121 opened by aymuos15 - 4
Periodic Boundary Conditions
#117 opened by william-silversmith - 9
Question on the output of contacts
#116 opened by tengssh - 2
Is the output label of largest_k ordered?
#118 opened by hhuang91 - 5
Reduce Peak Memory Consumption
#16 opened by william-silversmith - 2
Additional metrics support
#108 opened by drusmanbashir - 7
Statistics output
#114 opened by ckolluru - 6
What is process?
#72 opened by RylanSchaeffer - 4
About the lastest_k function
#113 opened by seisen0305 - 6
largest_k fails for transposed arrays
#112 opened by TheRealBazhen - 2
Cannot find reference 'dust' in 'cc3d.py'
#105 opened by maxrohleder - 14
- 1
cc3d.statistics["bounding_boxes"] are wrong
#110 opened by nr2cr24 - 1
Question on comparing individual lesions between two masks based on the cc3d.statistics output.
#106 opened by PanosProv - 7
Massive memory Leak
#102 opened by modaresimr - 5
1D Array of 4 Elements Incorrect
#103 opened by modaresimr - 1
dust sugnature
#101 opened by doiko - 2
Applying Dust and largest_k dtype output option
#100 opened by doiko - 3
cc3d.dust fails
#99 opened by doiko - 0
- 5
- 7
Better Algorithm Mk. II
#37 opened by william-silversmith - 7
Label Statistics
#75 opened by william-silversmith - 2
cc3d.statistics['bounding_boxes'] is contains floats instead of int as slice positions
#90 opened by drusmanbashir - 2
Add Remove Dust Function
#83 opened by william-silversmith - 5
- 7
List of label indices?
#41 opened by atpolonsky - 2
Add support to release linux aarch64 wheels
#77 opened by odidev - 4
- 9
- 4
- 2
warning from numpy
#69 opened by jingpengw - 5
Visualization
#56 opened by Ademord - 11
Using cc3d with multiple channels?
#57 opened by sneh-debug - 1
- 2
the limit of union-find array is 65535?
#52 opened by lvbirui - 7
Apply mask prior to segmentation?
#40 opened by atpolonsky - 2
Will it work with pointcloud data?
#38 opened by chowkamlee81 - 21
Pictured Example
#34 opened by aliakbarera - 0
14 Connected
#32 opened by william-silversmith - 4
- 4
Memory issue when i working with connected-components-3d ? volume images shape are 1000 X 1500 X 7000 ?
#28 opened by selvakarna - 2
Region Graph Function
#18 opened by william-silversmith - 3
6-connected for DNS
#25 opened by hannahmenke - 3
- 1
How differentiate small 3d objects from 3D Volume ?using How to remove small object [3d volume] using cc3d.connected_components?
#22 opened by selvakarna - 6
max_labels questions
#15 opened by unidesigner