william-silversmith
Software development for connectomics. Image by A. Sterling from MICrONS data. Office hours Wednesday and Friday. See link below.
Seung Lab @ Princeton UniversityUSA
Pinned Repositories
cloud-files
Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.
cloud-volume
Read and write Neuroglancer datasets programmatically.
connected-components-3d
Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)
euclidean-distance-transform-3d
Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.
igneous
Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
kimimaro
Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
countless
Code and performance tests to demonstrate the COUNTLESS algorithm. https://medium.com/@willsilversmith/countless-high-performance-2x-downsampling-of-labeled-images-using-numpy-e70ad3275589
norm
A SQL builder that doesn't force its opinions on you. Just pastes SQL together in a constructive manner.
william-silversmith's Repositories
william-silversmith/countless
Code and performance tests to demonstrate the COUNTLESS algorithm. https://medium.com/@willsilversmith/countless-high-performance-2x-downsampling-of-labeled-images-using-numpy-e70ad3275589
william-silversmith/norm
A SQL builder that doesn't force its opinions on you. Just pastes SQL together in a constructive manner.
william-silversmith/krankinwagon
#WHGameJam
william-silversmith/pyspng
Python bindings for libspng. Use with numpy.
william-silversmith/browser-mem-test
Evaluate browser memory usage for LZMA or Marching Cubes
william-silversmith/cloud-volume
A serverless client for accessing local and cloud Neuroglancer Precomputed volumes.
william-silversmith/cmtk
Unofficial git clone of Computational Morphometry Toolkit (CMTK)
william-silversmith/compressedseg
william-silversmith/conda-forge-pinning-feedstock
A conda-smithy repository for conda-forge-pinning.
william-silversmith/connected-components-3d
Connected components on multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants.
william-silversmith/data-cube-x
3D biomedical image stack + viewer for the web w/ fast CPU rendering
william-silversmith/dbscan-python
Theoretically Efficient and Practical Parallel DBSCAN
william-silversmith/estimating-provisional-labels-paper
Public repository for the paper "Improving Multi-Label Connected Components by Estimating Provisional Labels"
william-silversmith/fpzip
Lossless compressor of multidimensional floating-point arrays
william-silversmith/google-cloud-python
Google Cloud Client Library for Python
william-silversmith/GRAPHGEN
An open-source framework for optimizing binary image processing algorithms.
william-silversmith/kindle-science
Science and Math papers that have been reformatted for Kindle. https://medium.com/@willsilversmith/reading-science-papers-on-your-kindle-4d7633f6ec4c
william-silversmith/memory_profiler
Monitor Memory usage of Python code
william-silversmith/MeshParty
william-silversmith/mmh3
Python wrapper for MurmurHash (MurmurHash3), a set of fast and robust hash functions.
william-silversmith/neuroglancer
WebGL-based viewer for volumetric data
william-silversmith/precomputed
Slurm/python scripts for converting light sheet data to precomputed format for Neuroglancer visualization
william-silversmith/psutil
Cross-platform lib for process and system monitoring in Python
william-silversmith/scipy
Scipy library main repository
william-silversmith/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
william-silversmith/stardist
StarDist - Object Detection with Star-convex Shapes
william-silversmith/tenacity
Retrying library for Python
william-silversmith/TensorFlow.jl
A Julia wrapper for TensorFlow
william-silversmith/veryshare
A Super Sharable Website to Prank the Internet and Make a Shallow Point
william-silversmith/yaot
Yet another octree