sformel-usgs
Biologist with the United States Geological Survey (USGS) Science Analytics and Synthesis (SAS)
@DOI-USGS
Pinned Repositories
arctic_eDNA_data_example
This repository contains data from PMEL EcoFOCI cruises used as an example case for submitting NOAA eDNA metabarcoding data to OBIS
2023-08-01-usgs-cdi-online
Software Carpentries Workshop: R for Reproducible Analysis
bds-primer-best-practices
A working directory for the best practices documents being developed by the Biological Data Standards Cluster as companion products to the Biological Data Standards Primer.
bio_data_guide
Standardizing Marine Biological Data Working Group - An open community to facilitate the mobilization of biological data to OBIS.
copepoda
An R package to locally serve copepod data from https://www.st.nmfs.noaa.gov/plankton/about/about-copepod.html
dataproducts
Dataproducts using OBIS data
doc-publishing-dna-derived-data
This guide shows how to publish DNA-derived spatiotemporal biodiversity data and make it discoverable through national and global biodiversity data discovery platforms. Based on experiences from Australia, Norway, Sweden, UNITE, and GBIF.
endophytes_mimulus
Bioinformatic and statistical analyses of fungal endophytes in Mimulus spp. along an elvational gradient in the Sierra Nevada, California, US
FishGlob_data
Database and methods related to the manuscript "An integrated database of fish biodiversity sampled with scientific bottom trawl surveys"
ioos_code_lab
Notebook demonstrations and examples
sformel-usgs's Repositories
sformel-usgs/endophytes_mimulus
Bioinformatic and statistical analyses of fungal endophytes in Mimulus spp. along an elvational gradient in the Sierra Nevada, California, US
sformel-usgs/r-raster-vector-geospatial
Introduction to Geospatial Raster and Vector Data with R
sformel-usgs/ppt-template
GBIF PowerPoint template repository
sformel-usgs/test_website_2024
test for ESIIL training
sformel-usgs/bio_data_guide
Standardizing Marine Biological Data Working Group - An open community to facilitate the mobilization of biological data to OBIS.
sformel-usgs/talks
Source code for my slides
sformel-usgs/bds-primer-best-practices
A working directory for the best practices documents being developed by the Biological Data Standards Cluster as companion products to the Biological Data Standards Primer.
sformel-usgs/sequence-search
sformel-usgs/sg-12-dataset
OBIS SG 12 training example dataset
sformel-usgs/manual
The OBIS manual
sformel-usgs/test1
Test1 for github actions
sformel-usgs/rCRUX
A repository for my work on rCRUX
sformel-usgs/obisindicators
R package for generating indicators from OBIS
sformel-usgs/FishGlob_data
Database and methods related to the manuscript "An integrated database of fish biodiversity sampled with scientific bottom trawl surveys"
sformel-usgs/dataproducts
Dataproducts using OBIS data
sformel-usgs/ioos_code_lab
Notebook demonstrations and examples
sformel-usgs/arctic_eDNA_data_example
This repository contains data from PMEL EcoFOCI cruises used as an example case for submitting NOAA eDNA metabarcoding data to OBIS
sformel-usgs/2023-08-01-usgs-cdi-online
Software Carpentries Workshop: R for Reproducible Analysis
sformel-usgs/open-biodiversity-indicators
Biodiversity indicators generated using open science methodology and FAIR taxonomic occurrence data.
sformel-usgs/spreadsheet-ecology-lesson
Data Organization in Spreadsheets for Ecologists
sformel-usgs/omics-data-management
Guide to omics data management, including NOAA Omics Data Management Plan.
sformel-usgs/National-RCS
Git repository for code calculating the rarity and climate sensitivity (RCS) index for anurans within the United States. Code originally from @silknets
sformel-usgs/shiny-server
My personal Shiny server
sformel-usgs/doc-publishing-dna-derived-data
This guide shows how to publish DNA-derived spatiotemporal biodiversity data and make it discoverable through national and global biodiversity data discovery platforms. Based on experiences from Australia, Norway, Sweden, UNITE, and GBIF.
sformel-usgs/copepoda
An R package to locally serve copepod data from https://www.st.nmfs.noaa.gov/plankton/about/about-copepod.html
sformel-usgs/TaxonomyWelder
sformel-usgs/iso2eml
Conversion utilities from ISO19139 metadata to EML