Pinned Repositories
awesome-skin-image-analysis-datasets
Datasets for skin image analysis
CIRCLe
CIRCLe: Color Invariant Representation Learning for Unbiased Classification of Skin Lesions. Mirror of https://github.com/arezou-pakzad/CIRCLe
DermSynth3D
Official code for "DermSynth3D: Synthesis of in-the-wild Annotated Dermatology Images". A data generation pipeline for creating photorealistic in-the-wild synthetic dermatalogical data with rich multi-task annotations for various skin-analysis tasks.
DOTNet
Addresses the problem of reconstructing images acquired by diffuse optical tomography using deep learning.
FuseNet
Repository for our deep multi-frequency fusion paper in DOT imaging.
mial-hamarneh-repository-template
A template to accelerate the release of state of the art software accompanying papers released at Prof. Hamarneh's medicalimageanalysis.com
MultiNet
Repository for our deep multitask paper in DOT imaging.
Rank2Count
The official repository for the paper "Learning-to-Count by Learning-to-Rank", accepted as an oral presentation at CRV2023
skin-lesion-segmentation-survey
SubPrecisionContactDetection.jl
A Julia package to detect contacts below the precision of a superresolution microscope between 2 subcellular organelles in 2-channel superresolution (STED) microscopy. Mirror of https://github.com/bencardoen/SubPrecisionContactDetection.jl
SFU Medical Image Analysis Lab's Repositories
sfu-mial/DermSynth3D
Official code for "DermSynth3D: Synthesis of in-the-wild Annotated Dermatology Images". A data generation pipeline for creating photorealistic in-the-wild synthetic dermatalogical data with rich multi-task annotations for various skin-analysis tasks.
sfu-mial/awesome-skin-image-analysis-datasets
Datasets for skin image analysis
sfu-mial/FuseNet
Repository for our deep multi-frequency fusion paper in DOT imaging.
sfu-mial/CIRCLe
CIRCLe: Color Invariant Representation Learning for Unbiased Classification of Skin Lesions. Mirror of https://github.com/arezou-pakzad/CIRCLe
sfu-mial/mial-hamarneh-repository-template
A template to accelerate the release of state of the art software accompanying papers released at Prof. Hamarneh's medicalimageanalysis.com
sfu-mial/skin-lesion-segmentation-survey
sfu-mial/DOTNet
Addresses the problem of reconstructing images acquired by diffuse optical tomography using deep learning.
sfu-mial/Rank2Count
The official repository for the paper "Learning-to-Count by Learning-to-Rank", accepted as an oral presentation at CRV2023
sfu-mial/LADOTNet
Repository for our limited angle deep learning based DOT image reconstruction
sfu-mial/MultiNet
Repository for our deep multitask paper in DOT imaging.
sfu-mial/SLiMe
Segment-Like-Me: 1-shot image segmentation using Stable Diffusion
sfu-mial/SubPrecisionContactDetection.jl
A Julia package to detect contacts below the precision of a superresolution microscope between 2 subcellular organelles in 2-channel superresolution (STED) microscopy. Mirror of https://github.com/bencardoen/SubPrecisionContactDetection.jl
sfu-mial/SYRAC
Synthesize, Rank, Count; A Method for unsupervised crowd counting using latent diffusion models
sfu-mial/TreeDiffusion
Official Code for "Representing Anatomical Trees by Denoising Diffusion of Implicit Neural Fields"
sfu-mial/DataCurator.jl
A scalable Julia package to transparently validate and transform large biomedical datasets using human readable recipes that are translated to machine verifiable templates. Mirror of https://github.com/bencardoen/DataCurator.jl
sfu-mial/ERGO.jl
Object / density detection in astigmatic superresolution dSTORM microscopy. Mirror of https://github.com/bencardoen/ERGO.jl
sfu-mial/ERGO.py
Mirror of https://github.com/bencardoen/ERGO.py
sfu-mial/labtools
A set of scripts to streamline remote working with clusters. Mirror of https://github.com/bencardoen/labtools
sfu-mial/singularity_slurm_cuda
Example on how to leverage Singularity on HPC. Mirror of https://github.com/bencardoen/singularity_slurm_cuda
sfu-mial/skin3d
Mirror of https://github.com/jeremykawahara/skin3d
sfu-mial/SlurmMonitor.jl
SLURM Monitor to detect node health and notify Slack in case of events. Mirror of https://github.com/bencardoen/SlurmMonitor.jl
sfu-mial/SPECHT.jl
SPECHT is a Julia implementation of a contrastive weakly supervised object detection and identification method for fluorescence microscopy. Mirror of https://github.com/bencardoen/SPECHT.jl
sfu-mial/VascuSynth
VascuSynth is short for Vascular Synthesizer: An algorithm and accompanying software for synthesizing vascular or other tubular, tree-like structures
sfu-mial/Colocalization.jl
Colocalization metrics and distances for images or their sparse representations. Mirror of https://github.com/bencardoen/Colocalization.jl
sfu-mial/DEEMD
Treatment efficacy estimation based on microscopy images on RxRx19a
sfu-mial/IDE-tips-tricks
Gist to collect urls/tips/tricks/configs for setup of IDEs (VSCode, vi, neovim, cgpt, copilot, ...)
sfu-mial/LogParadox.jl
Detects sufficient and necessary conditions for pattern inversion conditional on log transform Mirror of https://github.com/bencardoen/LogParadox.jl
sfu-mial/MaskTune
Code supporting our NeurIPS paper MaskTune: Mitigating Spurious Correlations by Forcing to Explore
sfu-mial/nERdy
This repository provides code for training, inference of endoplasmic reticulum segmentation method nERdy+, and the analysis of the dynamics presented in the paper nERdy: network analysis of endoplasmic reticulum dynamics
sfu-mial/SmlmTools.jl
Computational tools for single molecule localization / superresolution microscopy (point clouds). Mirror of https://github.com/bencardoen/SmlmTools.jl