Pinned Repositories
awesome-skin-image-analysis-datasets
Datasets for skin image analysis
CIRCLe
CIRCLe: Color Invariant Representation Learning for Unbiased Classification of Skin Lesions. Mirror of https://github.com/arezou-pakzad/CIRCLe
DermSynth3D
Official code for "DermSynth3D: Synthesis of in-the-wild Annotated Dermatology Images". A data generation pipeline for creating photorealistic in-the-wild synthetic dermatalogical data with rich multi-task annotations for various skin-analysis tasks.
FuseNet
Repository for our deep multi-frequency fusion paper in DOT imaging.
LesionElevation
[MICCAI ISIC 2024] Code for "Lesion Elevation Prediction from Skin Images Improves Diagnosis"
mial-hamarneh-repository-template
A template to accelerate the release of state of the art software accompanying papers released at Prof. Hamarneh's medicalimageanalysis.com
Rank2Count
The official repository for the paper "Learning-to-Count by Learning-to-Rank", accepted as an oral presentation at CRV2023
skin-lesion-segmentation-survey
StyleSeg
[MICCAI ISIC 2024] Code for "Segmentation Style Discovery: Application to Skin Lesion Images"
TreeDiffusion
Official Code for "Representing Anatomical Trees by Denoising Diffusion of Implicit Neural Fields"
SFU Medical Image Analysis Lab's Repositories
sfu-mial/awesome-skin-image-analysis-datasets
Datasets for skin image analysis
sfu-mial/DermSynth3D
Official code for "DermSynth3D: Synthesis of in-the-wild Annotated Dermatology Images". A data generation pipeline for creating photorealistic in-the-wild synthetic dermatalogical data with rich multi-task annotations for various skin-analysis tasks.
sfu-mial/StyleSeg
[MICCAI ISIC 2024] Code for "Segmentation Style Discovery: Application to Skin Lesion Images"
sfu-mial/FuseNet
Repository for our deep multi-frequency fusion paper in DOT imaging.
sfu-mial/skin-lesion-segmentation-survey
sfu-mial/CIRCLe
CIRCLe: Color Invariant Representation Learning for Unbiased Classification of Skin Lesions. Mirror of https://github.com/arezou-pakzad/CIRCLe
sfu-mial/DOTNet
Addresses the problem of reconstructing images acquired by diffuse optical tomography using deep learning.
sfu-mial/LesionElevation
[MICCAI ISIC 2024] Code for "Lesion Elevation Prediction from Skin Images Improves Diagnosis"
sfu-mial/Rank2Count
The official repository for the paper "Learning-to-Count by Learning-to-Rank", accepted as an oral presentation at CRV2023
sfu-mial/SLiMe
Segment-Like-Me: 1-shot image segmentation using Stable Diffusion
sfu-mial/TreeDiffusion
Official Code for "Representing Anatomical Trees by Denoising Diffusion of Implicit Neural Fields"
sfu-mial/VascuSynth
VascuSynth is short for Vascular Synthesizer: An algorithm and accompanying software for synthesizing vascular or other tubular, tree-like structures
sfu-mial/awesome-ai-for-health-journals
sfu-mial/LADOTNet
Repository for our limited angle deep learning based DOT image reconstruction
sfu-mial/MultiNet
Repository for our deep multitask paper in DOT imaging.
sfu-mial/SubPrecisionContactDetection.jl
A Julia package to detect contacts below the precision of a superresolution microscope between 2 subcellular organelles in 2-channel superresolution (STED) microscopy. Mirror of https://github.com/bencardoen/SubPrecisionContactDetection.jl
sfu-mial/SYRAC
Synthesize, Rank, Count; A Method for unsupervised crowd counting using latent diffusion models
sfu-mial/DataCurator.jl
A scalable Julia package to transparently validate and transform large biomedical datasets using human readable recipes that are translated to machine verifiable templates. Mirror of https://github.com/bencardoen/DataCurator.jl
sfu-mial/skin3d
Mirror of https://github.com/jeremykawahara/skin3d
sfu-mial/SPECHT.jl
SPECHT is a Julia implementation of a contrastive weakly supervised object detection and identification method for fluorescence microscopy. Mirror of https://github.com/bencardoen/SPECHT.jl
sfu-mial/AFreeCA
sfu-mial/Colocalization.jl
Colocalization metrics and distances for images or their sparse representations. Mirror of https://github.com/bencardoen/Colocalization.jl
sfu-mial/Corrected-Skin-Image-Datasets
Mirror of https://github.com/kakumarabhishek/Corrected-Skin-Image-Datasets.
sfu-mial/DEEMD
Treatment efficacy estimation based on microscopy images on RxRx19a
sfu-mial/IDE-tips-tricks
Gist to collect urls/tips/tricks/configs for setup of IDEs (VSCode, vi, neovim, cgpt, copilot, ...)
sfu-mial/LogParadox.jl
Detects sufficient and necessary conditions for pattern inversion conditional on log transform Mirror of https://github.com/bencardoen/LogParadox.jl
sfu-mial/MaskTune
Code supporting our NeurIPS paper MaskTune: Mitigating Spurious Correlations by Forcing to Explore
sfu-mial/nERdy
This repository provides code for training, inference of endoplasmic reticulum segmentation method nERdy+, and the analysis of the dynamics presented in the paper nERdy: network analysis of endoplasmic reticulum dynamics
sfu-mial/PET-Disentangler
sfu-mial/SmlmTools.jl
Computational tools for single molecule localization / superresolution microscopy (point clouds). Mirror of https://github.com/bencardoen/SmlmTools.jl