sg-s/xolotl

Issues

• xolotl won't run on M3 Mac

  #591 opened 6 months ago by smbaca
  8

• add new course info

  #589 opened 2 years ago by sg-s
  0

• xolotl needs a new release

  #587 opened 2 years ago by sg-s
  0

• xolotl x.fit issue

  #588 opened 2 years ago by smbaca
  2

• testConductances not working on Windows 10 machine

  #586 opened 2 years ago by smbaca
  23

• documentation may lead to accidentally include .git folders in their path, causing chaos

  #584 opened 2 years ago by smbaca
  24

• i can't test xolotl without the global optimization toolbox

  #585 opened 2 years ago by sg-s
  1

• AlphaSynapse is broken (at least in some version)

  #582 opened 2 years ago by smbaca
  5

• demo page on docs shows colors in plot, which is not produced because defaults are changed

  #583 opened 2 years ago by smbaca
  1

• there should exist infrastructure to pass vectors of data to compartments

  #581 opened 3 years ago by sg-s
  0

• add rectifying electrical synapse

  #580 opened 3 years ago by sg-s
  0

• Implementing dynamic clamp / real-time simulation

  #579 opened 3 years ago by JRS92
  2

• Struggling with inhibitory synapses

  #578 opened 3 years ago by AlexSonneborn
  11

• New C++11 features may allow us to do away with much of the type heirarchy

  #577 opened 3 years ago by sg-s
  5

• Trouble building C++ code from matlab

  #576 opened 3 years ago by alec-hoyland
  5

• Can we re-architecture the entire thing to cut out cpplab?

  #575 opened 3 years ago by sg-s
  1

• documentation should talk about caching to speed up repeated runs

  #538 opened 4 years ago by sg-s
  1

• xolotl.uninstall doesn't work when installed with a toolbox

  #572 opened 4 years ago by sg-s
  0

• merge neuron-db into this

  #574 opened 4 years ago by sg-s
  1

• are there a whole bunch of useless includes?

  #568 opened 4 years ago by sg-s
  1

• Is it possible to build a model without recompiling everything?

  #570 opened 4 years ago by sg-s
  0

• synapse activation functions binaries being stored in the wrong place

  #569 opened 4 years ago by sg-s
  0

• x.show('prinz/Cholinergic') is totally broken

  #559 opened 4 years ago by sg-s
  0

• synapses do not implement getCurrent methods

  #567 opened 4 years ago by sg-s
  0

• All currents should be reported in the same units (nA)

  #566 opened 4 years ago by sg-s
  0

• Automated testing framework proposal

  #565 opened 4 years ago by sg-s
  0

• Copying a cell with synapses leads to unexpected behaviour

  #564 opened 4 years ago by sg-s
  0

• Automated uploading of binaries (at least on macOS + GNU/linux)

  #562 opened 4 years ago by sg-s
  0

• x.upload should not use hard coded paths to gh

  #563 opened 4 years ago by sg-s
  0

• write a new upload() method to easily upload binaries to the binary server on github

  #561 opened 4 years ago by sg-s
  0

• "See also" links broken in docs

  #558 opened 4 years ago by sg-s
  0

• prinz/Cholinergic appears to always be use approximations.

  #560 opened 4 years ago by sg-s
  0

• Introduce a ion mechanism

  #556 opened 4 years ago by sg-s
  0

• conductance2.hpp -> additional_methods.hpp

  #552 opened 4 years ago by sg-s
  1

• switch to connect-by-default architecture for mechanisms

  #553 opened 4 years ago by sg-s
  0

• Better output readout for complex mechanisms

  #557 opened 4 years ago by sg-s
  0

• clamping currents computed using Ohm's Law, and do not respect custom getCurrent methods

  #555 opened 4 years ago by JRS92
  8

• Need a generalized scratch-in/out system to hndle synchronous computation of differnet mechanisms

  #551 opened 4 years ago by sg-s
  1

• need a way to call virtual functions in base classes (e.g. mechanism) from classes that derive from it

  #554 opened 4 years ago by sg-s
  0

• Missing binaries for examples

  #549 opened 4 years ago by neurologic
  2

• package does not include List (which also conflicts with a builtin) and causes object display to fail

  #550 opened 4 years ago by peterle041963
  3

• xolotl no longer works with the new puppeteer

  #548 opened 4 years ago by sg-s
  0

• why is getFullStateSize a function? Why is getClass a function?

  #546 opened 4 years ago by sg-s
  1

• Overhaul virtual functions in abstract classes to remove a bunch of boilerplate code from mechanisms

  #545 opened 4 years ago by sg-s
  4

• Documentation should talk about how to plot activation, inactivation variables over time (ChannelProbe)

  #544 opened 4 years ago by JRS92
  14

• There is almost certainly a memory leak somewhere

  #543 opened 4 years ago by sg-s
  0

• Defining integration method for conductance

  #541 opened 4 years ago by JRS92
  8

• improve xolotl object display in java-less windows

  #540 opened 4 years ago by sg-s
  0

• getGatingFunctions should return vectorized versions of the gating functions

  #539 opened 4 years ago by sg-s
  0

• xolotl should work in MATLAB online

  #537 opened 4 years ago by sg-s
  2