neuron

There are 197 repositories under neuron topic.

  • neuronsimulator/nrn

    NEURON Simulator

    Language:C++367291k113

  • AllenInstitute/bmtk

    Brain Modeling Toolkit

    Language:Python259249584

  • BlueBrain/CoreNeuron

    Simulator optimized for large scale neural network simulations.

    Language:C++1342524237

  • ArtemKirsanov/BlenderSpike

    A Blender add-on to bring animations from NEURON

    Language:Python1255225

  • swharden/pyABF

    pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files

    Language:Jupyter Notebook981911133

  • srid/neuron-template

    A template to get started with neuron

    Language:Markdown845720

  • RivuletStudio/rivuletpy

    Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.

    Language:Python6572017

  • srogatch/ProbQA

    Probabilistic question-asking system: the program asks, the users answer. The minimal goal of the program is to identify what the user needs (a target), even if the user is not aware of the existence of such a thing/product/service.

    Language:C++64816
  • BioExplorer

    BlueBrain/BioExplorer

    The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration

    Language:C++62528

  • natverse/nat

    NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

    Language:R611738525
  • awesome-computational-neuro-science

    realamirhe/awesome-computational-neuro-science

    A curated list of awesome cns frameworks, libraries, and software + First class pure python Tutorial Series for Spiking Neural Networks 🔥

    Language:Jupyter Notebook47239

  • ContextLab/computational-neuroscience

    Short undergraduate course taught at University of Pennsylvania on computational and theoretical neuroscience. Provides an introduction to programming in MATLAB, single-neuron models, ion channel models, basic neural networks, and neural decoding.

    Language:TeX445311

  • sg-s/xolotl

    A MATLAB neuron simulator. Very fast (written in C++). Flexible (fully object oriented). Immediate (live manipulation in MATLAB). Comes with a powerful parameter optimizer. Get started ➡️

    Language:C++4374528

  • MediaTek-NeuroPilot/tflite-neuron-delegate

    MediaTek's TFLite delegate

    Language:C++38486

  • ProjectPyRhO/PyRhO

    A virtual optogenetics laboratory

    Language:Python34337

  • Jumaruba/SNN

    This is a repository with implementations of neuron models, synapses, and spiking neural networks (SNN). It's still in development and it has original content in terms of code.

    Language:Python30367

  • orena1/NEURON_tutorial

    Tutorial for understanding how to use NEURON simulation environment

    Language:AGS Script29228

  • BlueBrain/MorphIO

    A python and C++ library for reading and writing neuronal morphologies

    Language:C++271513322

  • pyrho/nerveux.nvim

    A neovim plugin written in lua to interact with the neuron Zettelkasten software.

    Language:Lua25363

  • BlueBrain/Ultraliser

    Reconstruction of watertight meshes, annotated volumes and center line skeletons of neuroscience spatial structures from non-watertight inputs, segmented masks, skeletons of NGV morphologies and volumes.

    Language:C++245514

  • navis-org/pymaid

    Python library to interface with CATMAID servers. Fully interoperable with navis.

    Language:Python2368912

  • PavlidisLab/neuroexpresso

    :bar_chart: Gene expression in neuroexpresso database

    Language:R176441

  • aca/neuron-language-server

    Language server implementation for neuron

    Language:Go169131

  • MetaCell/NEURON-UI

    NEURON User Interface

    Language:AMPL161594

  • CSDLLab/PyNeval

    PyNeval, a toolbox for quantative analysis on neuron reconstruction result.

    Language:Python14552

  • Merterm/BRAIN-M

    Brilliantly Radical Artificially Intelligent Neural Machine

    Language:Verilog14422

  • cudmore/SanPy

    SanPy is software for whole-cell current clamp analysis.

    Language:Python13375

  • JuliaSzymanska/Artificial-Intelligence

    Implementing Artificial Neural Network training process in Python

    Language:Python13102

  • carboncopies/BrainGenix-NES

    BrainGenix-NES aims to be a scalable, high-performance, fault-tolerant, distributed biological neuron emulation platform for whole-brain-emulation. [Note: Still in development]

    Language:C++126203

  • neuronsimulator/ringtest

    Ring network model test to demonstrate the use of CoreNEURON

    Language:Python121336

  • shohan-pherones/snake-game-self-played

    This is a self-played snake game that uses genetic algorithm and neural network to learn and improve its gameplay over time. The game is built using the p5.js library for graphics and user interface, and the tensorflow.js and neataptic libraries for machine learning.

    Language:JavaScript12100

  • obophenotype/brain_data_standards_ontologies

    A repository for co-ordinating work on ontologies for the Brain Data Standards Project

    Language:Python981953

  • BlueBrain/BlueCelluLab

    Biologically detailed neural network simulations and analysis API

    Language:Python864411

  • MarcelBeining/T2N

    T2N is an extension of the TREES toolbox providing an interface between Matlab and the compartmental modeling environment NEURON. It was published in (and should be cited this way): Beining M, Mongiat, LA, Schwarzacher SW, Cuntz H, Jedlicka P: T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells. eLife 2017; 6:e26517

    Language:MATLAB83103

  • neurokernel/neurodriver

    LPU class with support for various neuron and synapse models

    Language:Jupyter Notebook861012

  • NeuroML/org.neuroml.export

    Export from NeuroML & LEMS

    Language:Java893710