AllenInstitute/bmtk

Issues

• Ability to assign cells to different processes using their gids

  #384 opened 3 months ago by tjbanks
  2

• Cannot simulate PointNet network with custom set_syn_weight function

  #381 opened 4 months ago by MargauxCalice
  0

• Merge tutorials (workshop and regular)

  #336 opened a year ago by antonarkhipov
  0

• Cannot rebuild network for V1 models

  #380 opened 5 months ago by lyuyinyang
  1

• Cannot set glif_cond model parameters in PointNet

  #376 opened 6 months ago by Jballbe
  0

• Many examples won't work if config file is not specified in Python 3.9+

  #374 opened 6 months ago by shixnya
  2

• PointNet Synapse Dynamics params receptor type referring to proximal dendrite

  #373 opened 6 months ago by Jballbe
  0

• Assigning Individual cell model configuration file to each node of a population

  #371 opened 7 months ago by Jballbe
  0

• Confusing time stamps in TemporalFilter imshow function

  #370 opened 7 months ago by weiwei2027
  0

• Refer to NEST models and NESTML

  #363 opened 8 months ago by Jballbe
  6

• Record GLIF model after spike current PointNet

  #365 opened 8 months ago by Jballbe
  2

• Extracting synapses placement along depth axis

  #344 opened a year ago by nicolomeneghetti
  2

• The support of GPU

  #343 opened a year ago by Alex-czh
  2

• Synapse location

  #342 opened a year ago by bhmagic
  0

• FilterNet: Changing the location of nondominant filter also changes the location of dominant filter in class "TwoSubfieldLinearCell" of "cellmodel.py" in bmtk

  #339 opened a year ago by CloudyDory
  2

• "TwoSubfieldLinearCell" saves the dominant_filter amplitude for nondominant_filter unit

  #337 opened a year ago by CloudyDory
  0

• The cosine bump basis functions used in FilterNet seem to be different from the formula in Pillow et.al. J Neurosci 2005

  #334 opened a year ago by CloudyDory
  0

• Using bionet iclamp with MPI fails due to accessing cells not on rank

  #331 opened a year ago by tjbanks
  0

• tutorial 5 os.geteuid nest root access error

  #329 opened a year ago by yeraonjin06
  0

• tutorial 1 step 2 compiling error

  #328 opened a year ago by yeraonjin06
  0

• Problem importing bmtk.analyzer.compartment

  #327 opened a year ago by moravveji
  2

• Installing from source via pip

  #326 opened a year ago by moravveji
  0

• Load from h5.

  #324 opened a year ago by pablomc88
  0

• Likely invalid example in the docs

  #323 opened a year ago by Helveg
  0

• Contact link broken

  #322 opened a year ago by Helveg
  0

• ECP module not recording consistently

  #321 opened a year ago by GregGlickert
  0

• Tutorial 1 step 3

  #208 opened 3 years ago by jonluntzel
  2

• report for computing population-resolved ecp and average membrane potentials

  #312 opened a year ago by nicolomeneghetti
  4

• gzip compression for `sourceNetwork_targetNetwork_edges.h5`?

  #271 opened 2 years ago by flomlo
  3

• Direction Rule in v1_biophysical build_network

  #296 opened 2 years ago by nicolomeneghetti
  4

• How to target specific nodes in add_edges function ?

  #286 opened 2 years ago by MargauxCalice
  1

• Filter movie, run_filternet fails for configuration reasons. When movie is supplied.

  #283 opened 2 years ago by russelljjarvis
  4

• Loading nodes from SONATA files and use them to build connections with NetworkBuilder

  #287 opened 2 years ago by MargauxCalice
  1

• Simultaneously compute edge location and count onto biophysical postsynaptic neurons

  #268 opened 2 years ago by nicolomeneghetti
  13

• Extracellular simulation - electrode mesh file

  #272 opened 2 years ago by nilsvanrompaey
  5

• Core neuron support?

  #282 opened 2 years ago by GregGlickert
  2

• Extracellular Stimulation - Electrode Mesh file - KeyError

  #198 opened 2 years ago by CatarinaM17
  1

• NameError: name 'comm' is not defined

  #220 opened 2 years ago by dervinism
  2

• pointnet: test_glif_utils.py Fatal Python error: Segmentation fault

  #274 opened 2 years ago by mitometa
  10

• Tutorial 4: raster plot error

  #273 opened 2 years ago by mitometa
  8

• Electrode positions for computing extracellular potentials

  #269 opened 2 years ago by nicolomeneghetti
  2

• ERROR:NestIOUtils:weights must be a 1-dimensional NumPy array

  #259 opened 2 years ago by nicolomeneghetti
  10

• Recording variables with different DT

  #265 opened 2 years ago by GregGlickert
  3

• 05_pointnet_modeling.ipynb gives error "Exception: Could not find any network files. Unable to build network."

  #184 opened 3 years ago by mariakesa
  13

• bio_advanced_stimuli - "ValueError: argument not a density mechanism name."

  #206 opened 2 years ago by mjhyman
  7

• SimulationConfig ValidationError with jsonschema 4.6.0

  #241 opened 2 years ago by emollier
  1

• when simulate responses of network .

  #194 opened 3 years ago by keloli
  5

• Example CSV for Custom Input Waveform

  #207 opened 3 years ago by mjhyman
  0

• Spike input from real neurons

  #183 opened 3 years ago by mariakesa
  1

• Circuit Configuration File Nodes and Edges Out of Order

  #180 opened 3 years ago by mwstroud
  1