neuroinformatics
There are 55 repositories under neuroinformatics topic.
AllenInstitute/bmtk
Brain Modeling Toolkit
aces/Loris
LORIS is a web-accessible database solution for longitudinal multi-site studies.
RivuletStudio/rivuletpy
Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.
cortex-lab/alyx
Database for experimental neuroscience laboratories
scidash/neuronunit
A package for data-driven validation of neuron and ion channel models using SciUnit
Saran-nns/sorn
PyPi Package of Self-Organizing Recurrent Neural Networks (SORN) and Neuro-robotics using OpenAI Gym
the-virtual-brain/tvb-recon
Tools for creating full TVB models from individual anatomical scans
raamana/pyradigm
Research data management in biomedical and machine learning applications
tkkarjal/magia
Automated brain PET analysis pipeline
gbook/nidb
NeuroInformatics Database
school-brainhack/school-brainhack.github.io
Website of the BrainHack School
AllenInstitute/dipde
Numerical solver for coupled population density equations
oist-ncbc/spykesim
Extended edit similarity measurement for high dimensional discrete-time series signal (e.g., multi-unit spike-train).
PennLINC/CuBIDS
Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.
mvidaldp/Traumschreiber-mobileEEG
Android app for EEG data visualization and recording with the Traumschreiber BLE device
PavlidisLab/neuroexpresso
:bar_chart: Gene expression in neuroexpresso database
czh513/EEG-Inherent-Fuzzy-Entropy
EEG Signal Processing - Entropy
danieltudosiu/nmpevqvae
Neuromorphologicaly Preserving Volumetric Data Encoding Using VQ-VAE
PavlidisLab/markerGeneProfile
Marker gene profile estimation method used in NeuroExpresso manuscript
Kevinwenya/EEG
脑电波：视觉感受区电位信号(LFP)与视觉刺激之间关系研究（盲信号处理）
PavlidisLab/neuroExpressoAnalysis
Paper at: http://www.eneuro.org/content/4/6/ENEURO.0212-17.2017
jpdominguez/NAVIS-Tool
Neuromorphic Auditory Visualizer Tool
boxcutter/oci
Open container images 📦
SainsburyWellcomeCentre/crabs-exploration
A toolkit for detecting and tracking crabs in the field.
ziemowit-s/neuronpp
Neuron++ is a library which wraps NEURON (http://www.neuron.yale.edu) with easy to use Python objects.
gustavopamplona/Personode
Personode: a new toolbox for ICA map classification and individualized ROI definition
sbhattacharyay/nims
Neurological Injury Motion Sensing (NIMS) Project
AmigoLab/nmpevqvae
Neuromorphologicaly Preserving Volumetric Data Encoding Using VQ-VAE
Romantic-Pumpkin/PDT_fninf
In order to accelerate progress in cohort studies, we proposed a hierarchical neuroscience knowledge base consisting of projects/organizations, multi-modal databases and toolkits, and take the information object in Frontiers in Neuroscience as a example input. Meanwhile, we developed and open sourced the query tool, PDT_fninf , so that researchers can quickly access the knowledge base.
WizardOfAus/Brain-Computer-Interfaces-Starter-Pack
A Starter Pack Into Getting, Learning and Making BCIs
intheon/qascade
Qascade: Cascading File Keys
NBCLab/cmhc
MATLAB-based code for correlation matrix based hierarchical clustering
BlueBrain/atlas-enhancement
Tools to generate flatmaps of brain atlases & code to add barrel and barrel column annotations to Allen Mouse CCFv3
gtaberna/mrtim
MR-TIM: MR-based head tissue modelling
mori-c/neurotech
Introduction to Neurotechnology Coursework @ UofT
SamuelHathcock/NeuroCircuitSim
Java application that simulates the simple computational properties of neural circuits. + Genetic algorithm foundations