shahpnmlab

shahpnmlab's Stars

• teamtomo/torch-fourier-rescale

  Rescale 2D and 3D images by Fourier padding/cropping in PyTorch

  Language:Python2

• KindXiaoming/pykan

  Kolmogorov Arnold Networks

  Language:Jupyter Notebook14.9k1.4k

• anmartinezs/polnet

  Generates synthetic datasets for Cryo-Electron Tomography

  Language:Python209

• warpem/warp

  Language:C#387

• rdrighetto/STOPGAP

  STOPGAP is a MATLAB-based package for subtomogram averaging.

  Language:MATLAB1

• advimman/lama

  🦙 LaMa Image Inpainting, Resolution-robust Large Mask Inpainting with Fourier Convolutions, WACV 2022

  Language:Jupyter Notebook8k844

• wright-cemrc-projects/cryoet-montage

  SerialEM, Python, and Unity Simulations for Cryo-Electron Tomography and Montage Tomography.

  Language:C#16

• wan-lab-vanderbilt/STOPGAP

  STOPGAP is a MATLAB-based package for subtomogram averaging.

  Language:MATLAB296

• bforsbe/OccuPy

  Language:Python174

• brisvag/stemia

  Scripts and Tools for Electron Microscopy Image Analysis.

  Language:Python111

• teamtomo/mmdf

  macromolecular structure files (.pdb/.mmCIF) as pandas DataFrames

  Language:Python81

• compSPI/cryoAI

  Language:Python426

• goetschius/isecc

  Icosahedral Subparticle Extraction & Correlated Classification

  Language:Python33

• jbheymann/Bsoft

  Bernard's software package

  Language:HTML3

• alisterburt/tomo_preprocessing

  Language:Python41

• RILAB/statements

  Successful Job Applications and Grants

  678127

• serhii-londar/open-source-mac-os-apps

  🚀 Awesome list of open source applications for macOS. https://t.me/s/opensourcemacosapps

  41.5k2.3k

• Pymol-Scripts/Pymol-script-repo

  Collected scripts for Pymol

  Language:Python442258

• IsoNet-cryoET/IsoNet

  Self-supervised learning for isotropic cryoET reconstruction

  Language:Python6813

• aamelo/tomo_reconstruction

  From Raw Stacks to CTF corrected tomogram

  Language:MATLAB2

• solidiquis/bookmark

  Bookmark frequently visited directories without bloating your shell config with a bunch of cd aliases.

  Language:Shell2

• azazellochg/3DEM-conventions

  Conventions for 3DEM software packages

  Language:Python193

• azazellochg/relion-external-jobs

  Python scripts for Relion external job type

  Language:Python41

• geoffwoollard/learn_cryoem_math

  Language:Jupyter Notebook11827

• MathInspector/MathInspector

  A visual programing environment for scientific computing with python

  Language:Python89464

• schrodinger/pymol-open-source

  Open-source foundation of the user-sponsored PyMOL molecular visualization system.

  Language:C1.2k277

• teamtomo/teamtomo-site-archive

  A collaborative knowledge sharing platform for the cryo-ET community

  Language:MATLAB2013