/Jocx

Jade's optimisers, CoalHMM, and admixture modeling

Primary LanguagePythonGNU General Public License v2.0GPL-2.0

Jocx

Jade's optimisers, CoalHMM, and admixture modeling

This program executes CoalHMM with a specified model and optimiser using a given sequence of data in the format of ziphmm directories. The program prints to standard output the progression of the estimated parameters and the corresponding log likelihood.