shajoezhu

Programmer, data scientist, statistician. Made in China, built in NZ, upgraded in Oxford

RocheOxford

Pinned Repositories

DEploid
dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.
Language:C++20 6 2239
teal.modules.clinical
Provides teal modules for the standard clinical trials outputs
Language:R29 24 55913
tern
Table, Listings, and Graphs (TLG) library for common outputs used in clinical trials
Language:R73 24 61917
smcsmc
Demographic inference from whole genomes
Language:C++11 5 264
Chamaeleo
BGI DNA Storage Kit
Language:Python337
scrm
A coalescent simulator for genome-scale sequences
Language:C++39 9 637
bdiBeamer
Language:TeX1 1 31
CodeMonkeysIGV
Scripts for IGV automation, etc.
Language:Perl1 1 00
R-Tutor
R语言学习资料
Language:HTML2 1 00
workshop-r-swe
Good Software Engineering Practice for R Packages
Language:Lua20

shajoezhu's Repositories

shajoezhu/workshop-r-swe
Good Software Engineering Practice for R Packages
Language:Lua20
shajoezhu/DeepLearning-500-questions
深度学习500问，以问答形式对常用的概率知识、线性代数、机器学习、深度学习、计算机视觉等热点问题进行阐述，以帮助自己及有需要的读者。全书分为15个章节，近20万字。由于水平有限，书中不妥之处恳请广大读者批评指正。未完待续............ 如有意合作，联系scutjy2015@163.com 版权所有，违权必究 Tan 2018.06
1 1 01
shajoezhu/causal_inference_book
R Code for Causal Inference by Hernán and Robins
Language:HTML0 0
shajoezhu/causal_inference_r_workshop
Causal Inference in R Workshop
Language:HTML0 01
shajoezhu/china_nest_teal_gee_mmrm_demo
Language:R
shajoezhu/ci-images
Insights Engineering Container Images
Language:R0 0
shajoezhu/demo-eicu
Language:TSQL1 0
shajoezhu/demo-mimic
Language:TSQL1 0
shajoezhu/dh-tern
Table, Listings, and Graphs (TLG) library for common outputs used in clinical trials
shajoezhu/dplyr
dplyr: A grammar of data manipulation
Language:R0 0
shajoezhu/formatters
A framework for creating listings of raw data that include specialized formatting, headers, footers, referential footnotes, and pagination.
0 0
shajoezhu/handson-ml
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.
Language:Jupyter Notebook1 0
shajoezhu/hap.py
Haplotype VCF comparison tools
Language:C++1 0
shajoezhu/Kalman-and-Bayesian-Filters-in-Python
《Kalman-and-Bayesian-Filters-in-Python》书籍的中文翻译项目，卡尔曼与贝叶斯过滤波泛用于飞行器、无人驾驶等众多领域，本书是这些技术的入门书籍，通过详细的代码和实例来学习这些概念，而非严格的数学证明。
Language:Jupyter Notebook1 0
shajoezhu/kedro-starter-pandas-iris
Language:Python0 0
shajoezhu/lecture_notes
0 0
shajoezhu/mmrm
Mixed Models for Repeated Measures (MMRM) in R.
shajoezhu/msprime
A reimplementation of Hudson's classical ms simulator for modern data sets.
Language:C3 40
shajoezhu/NA12878
Data and analysis for NA12878 genome on nanopore
1 0
shajoezhu/rlistings
Value formatting and ASCII rendering infrastructure for tables and listings.
0 0
shajoezhu/rtables
Reporting tables with R
Language:R0 0
shajoezhu/shajoezhu
1 0
shajoezhu/shapeit4
Segmented HAPlotype Estimation and Imputation Tool
Language:C++0 0
shajoezhu/simulatr
Language:R
shajoezhu/staged.dependencies
R package to implement development stages for package development
Language:R0 0
shajoezhu/structure-tutorial
STRUCTURE tutorial
0 0
shajoezhu/test-colab
Language:R
shajoezhu/tibble
A modern re-imagining of the data frame
Language:R0 0
shajoezhu/utilities
Language:Python1 0
shajoezhu/zstd
Zstandard - Fast real-time compression algorithm
Language:C1 0