demo-mimic

This repo is a git-sparse-checkout from https://github.com/MIT-LCP/mimic-code

Repo文件结构 (Repo structure)

.              # Root
├── data       # mimic-demo data
├── docker     # Dockerfile etc
├── example
├── LICENSE
├── postgres   # scripts for SQL database
└── README.md

SQL数据库构建 (Build the database with postgres)

构建数据库 (Build)

cd postgres
psql -U postgres -c "alter user postgres superuser;"
createdb postgres
make create-user
make mimic-gz datadir="../data"

测试链接 (Test)

psql "dbname=mimic user=postgres password=postgres options=--search_path=mimiciii" -v ON_ERROR_STOP=1 -f postgres_checks.sql

用docker构建数据库 (Build the database with docker)

构建数据库

docker build . -f docker/Dockerfile -t shajoezhu/demo-mimic

或者直接从docker库下载 (Or you can pull it from docker repository via)

docker pull shajoezhu/demo-mimic

Docker部署 (Deployment)

首次运行,需要组建数据库 (For the first time, we need to build the database)

docker run -d \
--name demo-mimic-container \
-p 5433:5432 \
-e POSTGRES_PASSWORD=postgres \
-e MIMIC_PASSWORD=mimic \
-e BUILD_MIMIC=1 \
shajoezhu/demo-mimic

停止Docker部署 (Stop deployment)

docker stop demo-mimic-container

重启Docker部署 (Restart deployment)

docker start demo-mimic-container