shajoezhu
Programmer, data scientist, statistician. Made in China, built in NZ, upgraded in Oxford
RocheOxford
Pinned Repositories
DEploid
dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.
teal.modules.clinical
Provides teal modules for the standard clinical trials outputs
tern
Table, Listings, and Graphs (TLG) library for common outputs used in clinical trials
smcsmc
Demographic inference from whole genomes
Chamaeleo
BGI DNA Storage Kit
scrm
A coalescent simulator for genome-scale sequences
bdiBeamer
CodeMonkeysIGV
Scripts for IGV automation, etc.
R-Tutor
R语言学习资料
workshop-r-swe
Good Software Engineering Practice for R Packages
shajoezhu's Repositories
shajoezhu/bdiBeamer
shajoezhu/CodeMonkeysIGV
Scripts for IGV automation, etc.
shajoezhu/ICD9CMtoICD10CM
Simple converter for ICD-9-CM to ICD-10-CM codes.
shajoezhu/circleci-matrix
Small utility to mirror TravisCI's build matrix on CircleCI.
shajoezhu/Coalescence_simulation_game
shajoezhu/code-monkeys-wwk
Supporting data for code-monkeys talk on 24 November, 2014
shajoezhu/CodeMonkey_scrm
shajoezhu/GaoPool
shajoezhu/Internet-companies-of-China
More than 80,000 Chinese Internet company's information.
shajoezhu/Jocx
Jade's optimisers, CoalHMM, and admixture modeling
shajoezhu/knitr-examples
a collection of knitr examples
shajoezhu/kuhn3p
Official OCPC kuhn3p repo
shajoezhu/LDhat
Estimate recombination rates from population genetic data
shajoezhu/LDhot
Detect recombination hotspots using population genetic data.
shajoezhu/libkafka
A C++ client library for Apache Kafka v0.8+. Also includes C API.
shajoezhu/MarketVectors
Implementations for my blog post [here](https://medium.com/@TalPerry/deep-learning-the-stock-market-df853d139e02#.flflpo3xf)
shajoezhu/MHC-PRG
shajoezhu/mybib
list of references
shajoezhu/pbwt
Implementation of Positional Burrows-Wheeler Transform for genetic data
shajoezhu/python-cpp-miniextension
shajoezhu/radmixture
an R package for ancestry analysis
shajoezhu/readsim
Simulate DNA sequencing reads using real reads
shajoezhu/rehh
:exclamation: This is a read-only mirror of the CRAN R package repository. rehh — Searching for Footprints of Selection using Haplotype Homozygosity Based Tests
shajoezhu/REMOVEplot
shajoezhu/RNA-Seq_course
shajoezhu/rst-cheatsheet
A two-page cheatsheet for restructured text
shajoezhu/scrm-r
scrm, packaged for convenient usage in R
shajoezhu/server
A reference implementation of the APIs defined in the schemas repository.
shajoezhu/shiny-examples
shajoezhu/wechat
A wechat python SDK