shalinshah1993/SBSCL

Issues

• FBA gives incorrect objective_value 0 for bigg models iMM1415 & iRC1080

  #59 opened 6 years ago by matthiaskoenig
  1

• Deleting the dist folder

  #26 opened 7 years ago by shalinshah1993
  3

• Comp example file missing

  #27 opened 7 years ago by matthiaskoenig
  4

• Update uni-rostock maven dependencies

  #29 opened 7 years ago by niko-rodrigue
  5

• Postprocessing function for SED-ML files not working any more

  #31 opened 7 years ago by matthiaskoenig
  3

• SED-ML FileResolver is broken

  #32 opened 7 years ago by matthiaskoenig
  3

• Implement comp support

  #34 opened 7 years ago by matthiaskoenig
  1

• Run SBSCL against the SBML test suite in CI

  #36 opened 7 years ago by matthiaskoenig
  2

• Example SEDML L1V2 files have errors

  #37 opened 7 years ago by shalinshah1993
  4

• SBSCL expect one of the Output elements to be a time symbol

  #42 opened 7 years ago by shalinshah1993
  7

• Number of points in SED-ML simulations incorrect

  #44 opened 7 years ago by matthiaskoenig
  2

• Move the assembly file to the source folder

  #48 opened 7 years ago by draeger
  4

• No output generated for osci-nested-pulse sedml example

  #49 opened 7 years ago by shalinshah1993
  2

• Remove repeated-steady-scan-oscli test

  #50 opened 7 years ago by shalinshah1993
  11

• Remove repeated-stochastic-runs test

  #51 opened 7 years ago by shalinshah1993
  2

• Cannot reach steadyState for repeated-steady-scan-oscli test

  #52 opened 7 years ago by shalinshah1993
  8

• Remove org.simulator.examples folder

  #54 opened 7 years ago by shalinshah1993
  3

• Remove 3rd party libs from src/lib folder

  #56 opened 7 years ago by shalinshah1993
  4

• Update index.html and wiki

  #57 opened 6 years ago by shalinshah1993
  4

• Incorrect output curve for repressilator output #3

  #58 opened 7 years ago by shalinshah1993
  5

• Incorrect graphical output for some sedml tests

  #60 opened 6 years ago by shalinshah1993
  12

• Remove old javadocs

  #62 opened 6 years ago by shalinshah1993
  4

• LPsolver not working on ubuntu linux (libglpkjni_x64.so: undefined symbol: lib_set_fault_hook)

  #24 opened 6 years ago by matthiaskoenig
  14

• Run FBA tests on all BiGG models

  #28 opened 6 years ago by matthiaskoenig
  2

• Add support for nested repeated tasks

  #55 opened 6 years ago by shalinshah1993
  1

• Support for reading OMEX archives

  #3 opened 7 years ago by shalinshah1993
  4

• Post-processing simulation data for output

  #17 opened 7 years ago by shalinshah1993
  13

• Nested RepeatedTasks implementation algorithm

  #6 opened 7 years ago by niko-rodrigue
  7

• Add support for SteadyState simulation

  #9 opened 7 years ago by shalinshah1993
  12

• CompExample misses model files

  #15 opened 7 years ago by matthiaskoenig
  3

• glpksolver and lpsolver jars missing from repository

  #13 opened 7 years ago by matthiaskoenig
  1

• Most tests are failing, tests and examples must be refactored

  #23 opened 7 years ago by matthiaskoenig
  7

• Setup/activate CI with travis

  #22 opened 7 years ago by matthiaskoenig
  3

• Restructure SBSCL project directory

  #7 opened 7 years ago by shalinshah1993
  2

• Solver libraries should be separate artefacts

  #19 opened 7 years ago by matthiaskoenig
  0

• Multiple junit dependencies in project

  #20 opened 7 years ago by matthiaskoenig
  0

• Support for hierarchically structured models (comp package) - map submodel ids

  #4 opened 7 years ago by shalinshah1993
  11

• SCPsolver runs fine for individual XML files but not a folder

  #10 opened 7 years ago by shalinshah1993
  15

• Support for SED-ML L1V2

  #5 opened 7 years ago by shalinshah1993
  1

• ConstraintTest misses model file

  #16 opened 7 years ago by matthiaskoenig
  3

• Use maven repositories instead of copying jars in project

  #12 opened 7 years ago by matthiaskoenig
  1

• Maven build not working due to missing cplex

  #11 opened 7 years ago by matthiaskoenig
  15

• Remove CPLEX dependency from SBSCL

  #1 opened 7 years ago by shalinshah1993
  1

• Prepare simulation output for data-plotting

  #2 opened 7 years ago by shalinshah1993
  0

• Add support for FunctionalRange

  #8 opened 7 years ago by shalinshah1993
  0