Pinned Repositories
B-SOID
Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users.
confapp
This package manage configurations files using a singleton.
flyhostel
fslretho
GUI to the Rethomics suite for easy interpretation of ethoscope and DAM datasets
idoc_docs
idtrackerai
Fork of https://gitlab.com/polavieja_lab/idtrackerai
pythonvideoannotator-models-gui
sdeconv
2D and 3D image deconvolution with python
torchtest
vidio
simple, performant video reading and writing in python
shaliulab's Repositories
shaliulab/idtrackerai
Fork of https://gitlab.com/polavieja_lab/idtrackerai
shaliulab/flyhostel
shaliulab/idoc_docs
shaliulab/B-SOID
Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users.
shaliulab/fslretho
GUI to the Rethomics suite for easy interpretation of ethoscope and DAM datasets
shaliulab/sdeconv
2D and 3D image deconvolution with python
shaliulab/vidio
simple, performant video reading and writing in python
shaliulab/cv2cuda
shaliulab/deepethogram
shaliulab/deepethogram_vsc
shaliulab/ethoscope
shaliulab/ethoscopy
shaliulab/FlyHostelDocs
shaliulab/idocr
R package to analyze data produced in IDOC
shaliulab/idtrackerai-app
Fork of https://gitlab.com/polavieja_lab/idtrackerai-app
shaliulab/idtrackerai_vsc
shaliulab/imgstore
Store for video frames and metadata. Seekable & scaleable
shaliulab/long-timescale-analysis
shaliulab/midline-detector
Find a midline in a segmented picture
shaliulab/motionmapperpy
Modified Python 3.0 implementation of MotionMapper (https://github.com/gordonberman/MotionMapper)
shaliulab/pyforms-gui
shaliulab/pythonvideoannotator
Champalimaud Foundation - Python Video Annotator
shaliulab/pythonvideoannotator-module-idtrackerai
IdTrackerAi module for the Python Video Annotator software. http://idtracker.ai
shaliulab/rjson
shaliulab/scopr
Read Ethoscope data in R
shaliulab/Single_Cell_Sleep
code related to single cell sleep paper
shaliulab/SleepML
shaliulab/sleepr
Analyse sleep from movement (e.g. in Drosophila)
shaliulab/trajectorytools
A library with some utils to study and plot 2D trajectories developed by members of "de Polavieja lab" (Champalimaud Research, Lisbon, Portugal). Used in the study of animal collective behaviour.
shaliulab/yolov7
Implementation of paper - YOLOv7: Trainable bag-of-freebies sets new state-of-the-art for real-time object detectors