Pinned Repositories
autoOncotator
Python programs for automatically annotate vcf (variant call) file with Oncotator by selenium webdriver
autoTHSR
Docker-for-NGS
This is docker for NGS
GVCFiltering
Filtering vcf with population gvcf
harbor-certs
indelConverter
tool for converting between dash and non-dash INDEL format using docker
ngs-main-wes
This is dockerize "somatic paired-WES(Normal-Tumor) pipeline" which is refer to GATK best practice.
notes
sentieon
license server for Sentieon
vcf-filter
multi-anchors filtering and multi-threads implementation for vcf filtering
shanghungshih's Repositories
shanghungshih/ngs-main-wes
This is dockerize "somatic paired-WES(Normal-Tumor) pipeline" which is refer to GATK best practice.
shanghungshih/autoOncotator
Python programs for automatically annotate vcf (variant call) file with Oncotator by selenium webdriver
shanghungshih/GVCFiltering
Filtering vcf with population gvcf
shanghungshih/notes
shanghungshih/sentieon
license server for Sentieon
shanghungshih/vcf-filter
multi-anchors filtering and multi-threads implementation for vcf filtering
shanghungshih/autoTHSR
shanghungshih/Docker-for-NGS
This is docker for NGS
shanghungshih/harbor-certs
shanghungshih/indelConverter
tool for converting between dash and non-dash INDEL format using docker
shanghungshih/igv.js
Embeddable genomic visualization component based on the Integrative Genomics Viewer
shanghungshih/jupyter-notebook-via-ssh
connect to jupyter notebook running on server from local host
shanghungshih/linux-partII
shanghungshih/monitor2plot
A python program for monitoring CPU/MEM of your job, and save it as a plot.
shanghungshih/mysql2graph
shanghungshih/neo4j-graph-renderer
A React.js component that allows you to render neo4j graphs
shanghungshih/open-pedigree
A free and open-source pedigree tool by PhenoTips®
shanghungshih/paraSNP
This is docker container based annotation tools for scoring variants call file.
shanghungshih/pedigreejs
A web tool for building pedigrees, https://ccge-boadicea.github.io/pedigreejs/
shanghungshih/pybase64
Fast Base64 encoding/decoding in Python
shanghungshih/SDS-input-generator
generate input file for Singleton Density Score (SDS) computing
shanghungshih/search4text
shanghungshih/shanghungshih.github.io
shanghungshih/TCGA-survival
shanghungshih/tmux-config
Tmux configuration, that supercharges your tmux to build cozy and cool terminal environment
shanghungshih/trie-prefix-tree
Create and modify trie prefix structures and extract word lists including prefixes, anagrams and sub-anagrams