Calculation of gene TRID weights from a gene expression matrix
Calculate differential expression, differential connectivity and DiCODE (Differential COnnectivity and Differential Expression) weights of genes of any given gene expression matrix.
TRID(datExpr, datExpr_annotation, connectivity_method = NULL)
datExpr: the gene expression matrix used to compute TRID weights with columns correspond to individual genes and rows correspond to individual samples
datExpr_annotation: the annotation file with one column "status" which indicates two phenotypes of individual samples
connectivity_method: character, "pearson" (default) or "spearman" method used for calculation of differential connectivity
TRID(): Returns TRID weight lists
Shan Jiang
TRID_weights <- TRID(datExpr, datExpr_annotation)