shannonekj
climber-scientist on the rocks // open science // open mind
University of California, DavisYosemite, CA
Pinned Repositories
2020-GGG298
2021-GGG298
Winter 2021, GGG 298 - Tools for Data Intensive Research - UC Davis
angus
Materials for Analyzing Next-Generation Sequencing (ANGUS) course.
2016-adv-begin-shell-genomics
Workshop content for http://dib-training.readthedocs.org/en/pub/2016-01-13-adv-beg-shell.html
2016-metagenomics-sio
Metagenomics workshop at Scripps Institute of Oceanography
2018-Dec-Genome-Assembly
2018-Dec-Genome-Assembly
cluster_computing
Tutorials and information on how to approach doing science on compute clusters.
dissertation
ughhhhhh
genome_assembly
Pipeline for genome assembly of eukaryotic organisms...hopefully.
ngs_scripts
scripts I use a lot
shannonekj's Repositories
shannonekj/cluster_computing
Tutorials and information on how to approach doing science on compute clusters.
shannonekj/genome_assembly
Pipeline for genome assembly of eukaryotic organisms...hopefully.
shannonekj/2020-workflows-paper
Strategies for leveraging workflow systems to streamline large-scale biological analyses
shannonekj/dissertation
ughhhhhh
shannonekj/ngs_scripts
scripts I use a lot
shannonekj/2020-ggg-298-first-day-rnaseq
shannonekj/2020_ggg298_variant_calling
shannonekj/2021-ggg298-week7
How to use GitHub for GGG298
shannonekj/2021-ggg298-week7-1
Week 7 of GGG 298 at UC Davis, example repository
shannonekj/2021_ggg298_variant_calling
shannonekj/assemblathon2-analysis
collection of scripts and commands used by Ian Korf, Keith Bradnam, and Joe Fass in the analysis of Assemblathon 2 entries (assemblies)
shannonekj/Data_Organization_and_Management
shannonekj/DifCover
The DifCover pipeline aims to identify regions in a reference genome for which the read coverage of a sample1 to the reference is significantly different from the read coverage of a sample2. “Significantly different” is determined by user defined threshold on a ration between average coverages of given samples. The pipeline allows to exclude fr
shannonekj/DS_history_project
shannonekj/DS_Ne
Analysis for determining effective population size on historical dataset of delta smelt.
shannonekj/DS_sex-marker
Code related to the identification of sex specific markers in Delta Smelt
shannonekj/farm-notes
notes on the farm cluster
shannonekj/ggradar
radar charts with ggplot2
shannonekj/job_applications
shannonekj/Mills_Rotation
shannonekj/popgen_lamprey
shannonekj/presentations
repository for scripts & slides for talks and presentations
shannonekj/proc10xG
processing 10x genomics reads
shannonekj/purge_dups
haplotypic duplication identification tool
shannonekj/SexFindR
shannonekj/sexMarker
shannonekj/singletons
shannonekj/SWC_A19-1844
shannonekj/ucdavis_igg_sec
Repository for items related to the UC Davis Integrative Genetics and Genomics Student Executive Committee
shannonekj/Yosemite_Valley_bouldering_guidebook
Yosemite Valley bouldering guidebook materials