Pinned Repositories
AdaTiSS
adult-human-brain
Cytograph version used for adult human-brain analysis
ARF
Differential Ribosomal heterogeneity Prediction through Ribosome Profiling generated rRNA fragments and their Proximity to Ribosomal Proteins
auto-annotation-ah
Auto-annotations for analysis of the adult human brain
AutoImpute
AutoImpute : Autoencoder based imputation of single cell RNA-seq data
bioconda-recipes
Conda recipes for the bioconda channel.
CKG
Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge discovery making use of all the information contained in the graph
codon_TASEP
simulate TASEP model with codon-specific elongation rates
NGS-data-analysis
RiboMiner
a toolset for mining multi-dimensional features of the translatome with ribosome profiling data
sherkinglee's Repositories
sherkinglee/NGS-data-analysis
sherkinglee/RiboMiner
a toolset for mining multi-dimensional features of the translatome with ribosome profiling data
sherkinglee/AdaTiSS
sherkinglee/adult-human-brain
Cytograph version used for adult human-brain analysis
sherkinglee/ARF
Differential Ribosomal heterogeneity Prediction through Ribosome Profiling generated rRNA fragments and their Proximity to Ribosomal Proteins
sherkinglee/auto-annotation-ah
Auto-annotations for analysis of the adult human brain
sherkinglee/AutoImpute
AutoImpute : Autoencoder based imputation of single cell RNA-seq data
sherkinglee/bioconda-recipes
Conda recipes for the bioconda channel.
sherkinglee/CKG
Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge discovery making use of all the information contained in the graph
sherkinglee/codon_TASEP
simulate TASEP model with codon-specific elongation rates
sherkinglee/FME_atlas
Codes from manuscript
sherkinglee/Frame-Shift-Detector
sherkinglee/Human_Kidney_Multiomics_and_Spatial_Atlas_
sherkinglee/IntegrativeNetworkMap
sherkinglee/lncRNAKB
Scripts for analyzing data displayed and deposited on the long non-coding RNA knowledgebase (lncRNAKB)
sherkinglee/ML-NLP
此项目是机器学习(Machine Learning)、深度学习(Deep Learning)、NLP面试中常考到的知识点和代码实现，也是作为一个算法工程师必会的理论基础知识。
sherkinglee/PhyloCSFpp
PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF files with PhyloCSF and confidence scores.
sherkinglee/PROMISE
PROMISE is a distributed pipeline to detect post-translation modification on Mass Spectrometry data. The pipeline is solely for academic research, non-commercial or educational purposes; for other uses, please contact Weizmann institution.
sherkinglee/PROTAC-RL
sherkinglee/RASflow
RNA-Seq analysis workflow
sherkinglee/RiboAnalyzer
The RiboAnalyzer is a python package used for downstream analysis of ribosome profiling data
sherkinglee/RiboCode
release version
sherkinglee/Ribosome_Diricore_pipeline
sherkinglee/RocA
A hidden role of rocaglamide A in translation elongation
sherkinglee/sailor
CWL+Singularity implementation of an RNA editing workflow
sherkinglee/scRiboSeq_manuscript
sherkinglee/teaching_book
sherkinglee/Tensorflow-Tutorial
Tensorflow tutorial from basic to hard, 莫烦Python 中文AI教学
sherkinglee/transferlearning
Everything about Transfer Learning and Domain Adaptation--迁移学习
sherkinglee/uorfseqr
uORF identification pipeline using ribosome profiling data