different gnomad databases?
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apaul7 commented
Hello!
Thank you for making this program!
I believe that the the hg19/hg38 gnomad annotations are somewhat hardcoded into the program. Specifically to v2.0.1, which for hg38 is installed with annovar at hg38_ gnomad_genome.txt. I only have the newer versions of gnomad downloaded in my annovar installation.
- hg38_gnomad312_genome.txt
- hg38_gnomad30_genome.txt
- hg38_gnomad211_genome.txt
Could you create an input option to control what version of gnomad is used for annotations?
I got around the error:
Error: the database file /annovar/annovar/humandb/hg38_gnomad_genome.txt is not present
by symlinking hg38_gnomad312_genome.txt to hg38_ gnomad_genome.txt. Which works but is not an ideal solution.
shishenyxx commented
Option added and the tutorial and singularity will be updated. We will release a new subversion. Thank you so much for your feedback!
Best,
Arzoo and Xiaoxu