shishenyxx/DeepMosaic
DeepMosaic is a deep-learning-based mosaic single nucleotide classification tool without the need of matched control information.
PythonNOASSERTION
Issues
- 3
- 1
Indel predictions
#31 opened by RP-Bioinfo - 3
Effect of adapters on the final calling
#34 opened by ChenAugustin - 1
NAs in the predictions
#37 opened by msherafatian - 1
CRAM input
#20 opened by gevro - 1
Docker image?
#36 opened by BenpengMiao - 1
too many PASS for 30X WGS
#33 opened by huangyuanf - 2
Condition for "extra_mosaic_filters"
#35 opened by duct317 - 6
Using DeepMosaic for diploid plants
#19 opened by H-wong017 - 10
Too many mutect2 variants
#30 opened by gevro - 3
How to run DeepMosaic with nanopore WGS data?
#29 opened by ymcki - 1
homopolymer and dinucluotide filter
#27 opened by huangyuanf - 3
Large number of output files
#28 opened by gevro - 8
Very high number of mosaic predictions
#25 opened by gevro - 2
Multi-threaded support
#24 opened by gevro - 2
Run errors
#23 opened by gevro - 2
- 7
- 1
different gnomad databases?
#17 opened by apaul7 - 1
torch
#15 opened by qwertyuichi - 3
Errors at multiprocessing and matplotlib
#11 opened by hyunyong-koh - 1
A little issue in canvasPainter.py
#13 opened by Lidweixiang - 1
- 6
Questions about sample.vcf in step1
#10 opened by WZo0o - 2
high maf and score3 simultaneously?
#9 opened by kunalkathuria - 5
About SimData
#3 opened by songbowang125 - 2
speed up step 1?
#8 opened by kunalkathuria - 1
If input VCFs are splitted by chromosomes, should input BAM files also be splitted by chromosomes too?
#7 opened by ehojune - 8
Recommendations for calling candidate variants
#2 opened by wdecoster - 2
- 4
DeepMosaic performance at 30x depth?
#5 opened by changhan1110 - 3
running DeepMosaic with hg38
#4 opened by tgambin - 7