Predict ORFs in transcriptome sequences, e.g. RNA-seq de novo assembly.
OkORF is a sort of modification of TransDecoder by B. Haas. Many codes of TransDecoder are borrowed.
$ cp OkORF/run.conf.yml.example ./run.conf.yml
$ cp OkORF/run.rb ./
edit run.conf.yml
$ ruby run.rb
6 shell scripts are generated.
- run_script_1.sh
- run_script_2.sh
- run_script_3.sh
- run_script_4.sh
- run_script_5.sh
- sge_submit_Mcra_131016p3.sh
submit scripts to SGE by running sge_submit_Mcra_131016p3.sh.
sge_submit_Mcra_131016p3.sh