sib-swiss/single-cell-training

Scaling all genes - necessary?

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GeertvanGeest commented

We scale all features here:

seu <- Seurat::ScaleData(seu,
                 features = rownames(seu))

Why not the default which is only variable features?

taniawyss commented

We scale all features here:

seu <- Seurat::ScaleData(seu,
                 features = rownames(seu))

Why not the default which is only variable features?

I would agree to remove it, it is useless to scale all genes.