Pinned Repositories
containers-introduction-training
Course website "Docker and Singularity for reproducible research: getting started with containers"
first-steps-with-python-training
repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training
first-steps-with-R-training
repository of the 2-day course "First steps with R in Life Sciences" from SIB-training
glittr
A web application for finding and comparing bioinformatics training materials on GitHub and GitLab
intermediate-python-training
intro-bayesian-statistics-training
intro-machine-learning-training
NGS-variants-training
GitHub for the SIB courses NGS - Genome variant analysis
single-cell-training
SIB course on single cell transcriptomics by mostly using the Seurat pipeline
training-collection
Collection of bioinformatics training materials
SIB Swiss Institute of Bioinformatics's Repositories
sib-swiss/Knoto-ID
Topological invariants of open curves using the concept of knotoids
sib-swiss/SchoolRNA2020
Summer School on Computational RNA Biology
sib-swiss/dotlet
Compare biological sequences by the diagonal plot method
sib-swiss/HAMAP-SPARQL
Supplements for hamap as sparql
sib-swiss/megaclust
unbiased hierarchical density based parallel clustering of large datasets
sib-swiss/VibrioCholerae_HGT
Tools for the analysis of horizontal gene transfer in Vibrio cholerae
sib-swiss/genome-jumper
Genome Jumper
sib-swiss/gh-pages-training
sib-swiss/spring_school_bioinformatics_microbiology
sib-swiss/virusscan
Detection and quantification of virus sequences from illumina fastq files
sib-swiss/taccession
sib-swiss/training-collection-app
Web application to browse bioinformatics training material on GitHub
sib-swiss/managing-life-cycle-portfolio-sib-resources
Source data for the figures related to paper published by Gabella, Duvaud, and Durinx in Briefing in Bioinformatics and entitled "Managing the life cycle of a portfolio of Open Data Resources at the SIB Swiss Institute of Bioinformatics "
sib-swiss/course_website_template
Template to generate course websites in template
sib-swiss/dbc454
unbiased parallel density based clustering of large scale ITS data
sib-swiss/dsMIP
MIP/Datashield integration
sib-swiss/dsQueryLibraryServer
sib-swiss/dsREST
datashield REST interface
sib-swiss/dsSwissKnife-example
sib-swiss/fedx-endpoint
SPARQL FedX of multiple SIB resources combined in one virtual one.
sib-swiss/gemini-docker
sib-swiss/genome-jumper-ios
sib-swiss/micmap
Mapping of short reads in fastq format onto a reference
sib-swiss/NGS-archive-submission
sib-swiss/resourcex
sib-swiss/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
sib-swiss/server-log-analytics
Server Log Analytics in Apache Scala / Spark
sib-swiss/varapp-backend-py
sib-swiss/varapp-docs
sib-swiss/varapp-frontend-react